Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_L19
(562 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O55125|NIPS1_MOUSE Protein NipSnap1 164 1e-40
sp|Q9BPW8|NIPS1_HUMAN Protein NipSnap1 163 2e-40
sp|Q9PU58|NIPS2_BRARE Protein NipSnap2 162 4e-40
sp|O75323|NIPS2_HUMAN Protein NipSnap2 (Glioblastoma amplif... 162 7e-40
sp|O55126|NIPS2_MOUSE Protein NipSnap2 (Glioblastoma amplif... 156 4e-38
sp|Q9VXK0|NIPSN_DROME Protein NipSnap 155 8e-38
sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1 121 1e-27
sp|Q9UFN0|NPS3A_HUMAN Protein NipSnap3A (NipSnap4) (Target ... 54 3e-07
sp|Q5RAA9|NPS3A_PONPY Protein NipSnap3A 54 3e-07
sp|Q9CQE1|NPS3B_MOUSE Protein NipSnap3B 51 2e-06
>sp|O55125|NIPS1_MOUSE Protein NipSnap1
Length = 284
Score = 164 bits (415), Expect = 1e-40
Identities = 70/130 (53%), Positives = 101/130 (77%)
Frame = +1
Query: 7 DFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWA 186
++ EFRK R++ML+ R+ Q+L FS+W E +PR + +I+ELR+Y LKPGTMIEWGN WA
Sbjct: 147 EYLEFRKERSKMLLSRRNQLLLEFSFWNEPQPR-AGPNIYELRTYKLKPGTMIEWGNNWA 205
Query: 187 RGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVP 366
R I+ R+++ E + G F+ +G++++VHH+WAYKDL+ R++ RN AWR GWDE V +TVP
Sbjct: 206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265
Query: 367 LIRHMNSNIL 396
L+RHM S I+
Sbjct: 266 LVRHMESRIM 275
>sp|Q9BPW8|NIPS1_HUMAN Protein NipSnap1
Length = 284
Score = 163 bits (413), Expect = 2e-40
Identities = 69/130 (53%), Positives = 100/130 (76%)
Frame = +1
Query: 7 DFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWA 186
++ EFR+ R++ML+ R+ Q+L FS+W E +PR + I+ELR+Y LKPGTMIEWGN WA
Sbjct: 147 EYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPN-IYELRTYKLKPGTMIEWGNNWA 205
Query: 187 RGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVP 366
R I+ R+++ E + G F+ +G++++VHH+WAYKDL+ R++ RN AWR GWDE V +TVP
Sbjct: 206 RAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVP 265
Query: 367 LIRHMNSNIL 396
L+RHM S I+
Sbjct: 266 LVRHMESRIM 275
>sp|Q9PU58|NIPS2_BRARE Protein NipSnap2
Length = 286
Score = 162 bits (411), Expect = 4e-40
Identities = 71/130 (54%), Positives = 96/130 (73%)
Frame = +1
Query: 7 DFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWA 186
+F E+R R +ML+ R+ Q+L FS+W E PR + I+ELRSY L+PGTMIEWGNYWA
Sbjct: 149 EFLEYRSERGKMLLSRRNQLLLEFSFWNEPVPRDGPN-IYELRSYQLRPGTMIEWGNYWA 207
Query: 187 RGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVP 366
R I R+ + E + G F+ +GD++MVHH+WAYKDL+ R+ RN AW++ GWDE V +TVP
Sbjct: 208 RAIGYRQHNREAVGGFFSQIGDLYMVHHLWAYKDLQSREDTRNAAWQHEGWDEVVYYTVP 267
Query: 367 LIRHMNSNIL 396
LI+HM S I+
Sbjct: 268 LIQHMESRIM 277
>sp|O75323|NIPS2_HUMAN Protein NipSnap2 (Glioblastoma amplified sequence)
Length = 286
Score = 162 bits (409), Expect = 7e-40
Identities = 72/130 (55%), Positives = 97/130 (74%)
Frame = +1
Query: 7 DFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWA 186
+F EFRK R++ML+ RK Q+L FS+W E PR S +I+ELRSY L+PGTMIEWGNYWA
Sbjct: 149 EFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPR-SGPNIYELRSYQLRPGTMIEWGNYWA 207
Query: 187 RGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVP 366
R IR R+ +E + G F+ +G ++MVHH+WAY+DL+ R+ +RN AW GW+E V +TVP
Sbjct: 208 RAIRFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVP 267
Query: 367 LIRHMNSNIL 396
LI+ M S I+
Sbjct: 268 LIQEMESRIM 277
>sp|O55126|NIPS2_MOUSE Protein NipSnap2 (Glioblastoma amplified sequence)
Length = 281
Score = 156 bits (394), Expect = 4e-38
Identities = 70/130 (53%), Positives = 94/130 (72%)
Frame = +1
Query: 7 DFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWA 186
+F FRK R++ML+ RK Q+L FS+W E PR + I+ELRSY L+PGTMIEWGNYWA
Sbjct: 144 EFVNFRKARSDMLLSRKNQLLLEFSFWNEPVPRPGPN-IYELRSYQLRPGTMIEWGNYWA 202
Query: 187 RGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVP 366
R IR R+ +E I G F+ +G ++MV H+WAY+DL+ R+ +RN AW GW+E V +TVP
Sbjct: 203 RAIRFRQDSNEAIGGFFSQIGQLYMVDHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVP 262
Query: 367 LIRHMNSNIL 396
LI+ M S I+
Sbjct: 263 LIQEMESRIM 272
>sp|Q9VXK0|NIPSN_DROME Protein NipSnap
Length = 273
Score = 155 bits (391), Expect = 8e-38
Identities = 70/138 (50%), Positives = 93/138 (67%)
Frame = +1
Query: 1 DADFEEFRKRRNEMLVFRKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNY 180
D ++ + R++ L R Q L FSYWP+I R + +I+E+RSY L PGTMIEWGN
Sbjct: 134 DPEYLSLMQERSKFLRSRHLQYLLAFSYWPQIASR-TGKNIYEMRSYRLTPGTMIEWGNN 192
Query: 181 WARGIRVRKQHSEPIAGLFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHT 360
WAR I RK ++E AG F+ +G ++ VHH+W YK L+ RK+ R AWR+PGWDECV +T
Sbjct: 193 WARAINYRKHNNEAFAGFFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYT 252
Query: 361 VPLIRHMNSNILRATPFS 414
VPLIR M+ +L T FS
Sbjct: 253 VPLIREMHCRVLAPTEFS 270
>sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1
Length = 526
Score = 121 bits (303), Expect = 1e-27
Identities = 53/121 (43%), Positives = 79/121 (65%)
Frame = +1
Query: 52 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 231
RK I+ FSYW E + R + +++LRSY L+PGTMI+W + WA+GI+ R++ ++ + G
Sbjct: 404 RKNLIVKSFSYWREPEQRPPNH-VYDLRSYVLQPGTMIDWASAWAKGIQYRREANQDVGG 462
Query: 232 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPF 411
F VG +++V+H+WAY + R R+ W PGWD V +TVPLI+ M S IL T +
Sbjct: 463 FFAQVGQLYVVYHIWAYPSMSGRNDTRHATWAKPGWDATVANTVPLIKKMQSKILTPTKY 522
Query: 412 S 414
S
Sbjct: 523 S 523
>sp|Q9UFN0|NPS3A_HUMAN Protein NipSnap3A (NipSnap4) (Target for Salmonella secreted
protein C) (TassC)
Length = 247
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +1
Query: 100 PRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFTHVGD-IHMVHHMW 276
PRQ D +E RSY LKP M E+ + + +R HSE + G ++ V H+W
Sbjct: 29 PRQYDGIFYEFRSYYLKPSKMNEFLENFEKNAHLRTAHSELVGYWSVEFGGRMNTVFHIW 88
Query: 277 AYKDLEHRKKMRNEAWRNPGWDE-CVLHTVPLIRHMNSNILRATPF 411
Y + HR ++R ++ W E ++ + LI S I P+
Sbjct: 89 KYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPW 134
Score = 40.0 bits (92), Expect = 0.004
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 115 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 288
+ ++EL ++ +KPG WG+ + R + V +++ + T G ++ VH +W +
Sbjct: 143 EGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNES 202
Query: 289 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 414
+ R R+++ +P V +V + + +L T FS
Sbjct: 203 ADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFS 244
>sp|Q5RAA9|NPS3A_PONPY Protein NipSnap3A
Length = 247
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +1
Query: 100 PRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFTHVGD-IHMVHHMW 276
PRQ D +E RSY LKP M E+ + + +R HSE + G ++ V H+W
Sbjct: 29 PRQYDGIFYEFRSYYLKPSKMNEFLENFKKNAHLRTAHSELVGYWSVEFGGRMNTVFHIW 88
Query: 277 AYKDLEHRKKMRNEAWRNPGWDE-CVLHTVPLIRHMNSNILRATPF 411
Y + HR ++R ++ W E ++ + LI S I P+
Sbjct: 89 KYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPW 134
Score = 40.0 bits (92), Expect = 0.004
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +1
Query: 115 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 288
+ ++EL ++ +KPG WG+ + R + V +++ + T G ++ VH +W +
Sbjct: 143 EGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNES 202
Query: 289 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 414
+ R R+++ +P V +V + + +L T FS
Sbjct: 203 ADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFS 244
>sp|Q9CQE1|NPS3B_MOUSE Protein NipSnap3B
Length = 247
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +1
Query: 61 QILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFT 240
Q+ PF+ PRQS+ + +E R+Y LKP E+ + + +R HSE I G +T
Sbjct: 20 QVCSPFA----TGPRQSNGTFYEFRTYFLKPSKTNEFLENFKNSVHLRTAHSEMI-GYWT 74
Query: 241 --HVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDE 345
G + V H+W Y + HR +R ++ W E
Sbjct: 75 VEFGGRTNRVFHIWKYDNFAHRTAVRKALAKDKEWQE 111
Score = 42.4 bits (98), Expect = 8e-04
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +1
Query: 115 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 288
+ ++EL ++ +KPG WGN + R + V +S + T G ++ VH +W +
Sbjct: 143 EGVYELATFQMKPGGPALWGNAFKRAVNAHVELGYSTLVGVFHTEYGALNRVHVLWWNES 202
Query: 289 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 414
+ R R+ + +P V +V + + L T FS
Sbjct: 203 ADSRAAGRHWSHEDPRVVAAVRESVSYLESQQNTFLIPTSFS 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,373,915
Number of Sequences: 369166
Number of extensions: 1188265
Number of successful extensions: 3041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3029
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)