Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_P14
(519 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PU58|NIPS2_BRARE Protein NipSnap2 150 2e-36
sp|Q9VXK0|NIPSN_DROME Protein NipSnap 150 2e-36
sp|Q9BPW8|NIPS1_HUMAN Protein NipSnap1 149 3e-36
sp|O55125|NIPS1_MOUSE Protein NipSnap1 149 3e-36
sp|O75323|NIPS2_HUMAN Protein NipSnap2 (Glioblastoma amplif... 146 3e-35
sp|O55126|NIPS2_MOUSE Protein NipSnap2 (Glioblastoma amplif... 142 6e-34
sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1 121 1e-27
sp|Q9UFN0|NPS3A_HUMAN Protein NipSnap3A (NipSnap4) (Target ... 54 3e-07
sp|Q5RAA9|NPS3A_PONPY Protein NipSnap3A 54 3e-07
sp|Q9CQE1|NPS3B_MOUSE Protein NipSnap3B 51 2e-06
>sp|Q9PU58|NIPS2_BRARE Protein NipSnap2
Length = 286
Score = 150 bits (379), Expect = 2e-36
Identities = 65/115 (56%), Positives = 86/115 (74%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
R+ Q+L FS+W E PR + I+ELRSY L+PGTMIEWGNYWAR I R+ + E + G
Sbjct: 164 RRNQLLLEFSFWNEPVPRDGPN-IYELRSYQLRPGTMIEWGNYWARAIGYRQHNREAVGG 222
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNIL 353
F+ +GD++MVHH+WAYKDL+ R+ RN AW++ GWDE V +TVPLI+HM S I+
Sbjct: 223 FFSQIGDLYMVHHLWAYKDLQSREDTRNAAWQHEGWDEVVYYTVPLIQHMESRIM 277
>sp|Q9VXK0|NIPSN_DROME Protein NipSnap
Length = 273
Score = 150 bits (378), Expect = 2e-36
Identities = 67/121 (55%), Positives = 85/121 (70%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
R Q L FSYWP+I R + +I+E+RSY L PGTMIEWGN WAR I RK ++E AG
Sbjct: 151 RHLQYLLAFSYWPQIASR-TGKNIYEMRSYRLTPGTMIEWGNNWARAINYRKHNNEAFAG 209
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPF 368
F+ +G ++ VHH+W YK L+ RK+ R AWR+PGWDECV +TVPLIR M+ +L T F
Sbjct: 210 FFSQIGRLYNVHHIWCYKSLQDRKETREAAWRSPGWDECVAYTVPLIREMHCRVLAPTEF 269
Query: 369 S 371
S
Sbjct: 270 S 270
>sp|Q9BPW8|NIPS1_HUMAN Protein NipSnap1
Length = 284
Score = 149 bits (377), Expect = 3e-36
Identities = 63/115 (54%), Positives = 88/115 (76%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
R+ Q+L FS+W E +PR + I+ELR+Y LKPGTMIEWGN WAR I+ R+++ E + G
Sbjct: 162 RRNQLLLEFSFWNEPQPRMGPN-IYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGG 220
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNIL 353
F+ +G++++VHH+WAYKDL+ R++ RN AWR GWDE V +TVPL+RHM S I+
Sbjct: 221 FFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIM 275
>sp|O55125|NIPS1_MOUSE Protein NipSnap1
Length = 284
Score = 149 bits (377), Expect = 3e-36
Identities = 63/115 (54%), Positives = 89/115 (77%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
R+ Q+L FS+W E +PR + +I+ELR+Y LKPGTMIEWGN WAR I+ R+++ E + G
Sbjct: 162 RRNQLLLEFSFWNEPQPR-AGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGG 220
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNIL 353
F+ +G++++VHH+WAYKDL+ R++ RN AWR GWDE V +TVPL+RHM S I+
Sbjct: 221 FFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIM 275
>sp|O75323|NIPS2_HUMAN Protein NipSnap2 (Glioblastoma amplified sequence)
Length = 286
Score = 146 bits (368), Expect = 3e-35
Identities = 64/115 (55%), Positives = 85/115 (73%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
RK Q+L FS+W E PR S +I+ELRSY L+PGTMIEWGNYWAR IR R+ +E + G
Sbjct: 164 RKNQLLLEFSFWNEPVPR-SGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNEAVGG 222
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNIL 353
F+ +G ++MVHH+WAY+DL+ R+ +RN AW GW+E V +TVPLI+ M S I+
Sbjct: 223 FFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIM 277
>sp|O55126|NIPS2_MOUSE Protein NipSnap2 (Glioblastoma amplified sequence)
Length = 281
Score = 142 bits (357), Expect = 6e-34
Identities = 63/115 (54%), Positives = 83/115 (72%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
RK Q+L FS+W E PR + I+ELRSY L+PGTMIEWGNYWAR IR R+ +E I G
Sbjct: 159 RKNQLLLEFSFWNEPVPRPGPN-IYELRSYQLRPGTMIEWGNYWARAIRFRQDSNEAIGG 217
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNIL 353
F+ +G ++MV H+WAY+DL+ R+ +RN AW GW+E V +TVPLI+ M S I+
Sbjct: 218 FFSQIGQLYMVDHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIM 272
>sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1
Length = 526
Score = 121 bits (303), Expect = 1e-27
Identities = 53/121 (43%), Positives = 79/121 (65%)
Frame = +3
Query: 9 RKTQILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAG 188
RK I+ FSYW E + R + +++LRSY L+PGTMI+W + WA+GI+ R++ ++ + G
Sbjct: 404 RKNLIVKSFSYWREPEQRPPNH-VYDLRSYVLQPGTMIDWASAWAKGIQYRREANQDVGG 462
Query: 189 LFTHVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPF 368
F VG +++V+H+WAY + R R+ W PGWD V +TVPLI+ M S IL T +
Sbjct: 463 FFAQVGQLYVVYHIWAYPSMSGRNDTRHATWAKPGWDATVANTVPLIKKMQSKILTPTKY 522
Query: 369 S 371
S
Sbjct: 523 S 523
>sp|Q9UFN0|NPS3A_HUMAN Protein NipSnap3A (NipSnap4) (Target for Salmonella secreted
protein C) (TassC)
Length = 247
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 57 PRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFTHVGD-IHMVHHMW 233
PRQ D +E RSY LKP M E+ + + +R HSE + G ++ V H+W
Sbjct: 29 PRQYDGIFYEFRSYYLKPSKMNEFLENFEKNAHLRTAHSELVGYWSVEFGGRMNTVFHIW 88
Query: 234 AYKDLEHRKKMRNEAWRNPGWDE-CVLHTVPLIRHMNSNILRATPF 368
Y + HR ++R ++ W E ++ + LI S I P+
Sbjct: 89 KYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPW 134
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +3
Query: 72 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 245
+ ++EL ++ +KPG WG+ + R + V +++ + T G ++ VH +W +
Sbjct: 143 EGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNES 202
Query: 246 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 371
+ R R+++ +P V +V + + +L T FS
Sbjct: 203 ADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFS 244
>sp|Q5RAA9|NPS3A_PONPY Protein NipSnap3A
Length = 247
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 57 PRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFTHVGD-IHMVHHMW 233
PRQ D +E RSY LKP M E+ + + +R HSE + G ++ V H+W
Sbjct: 29 PRQYDGIFYEFRSYYLKPSKMNEFLENFKKNAHLRTAHSELVGYWSVEFGGRMNTVFHIW 88
Query: 234 AYKDLEHRKKMRNEAWRNPGWDE-CVLHTVPLIRHMNSNILRATPF 368
Y + HR ++R ++ W E ++ + LI S I P+
Sbjct: 89 KYDNFAHRTEVRKALAKDKEWQEQFLIPNLALIDKQESEITYLVPW 134
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Frame = +3
Query: 72 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 245
+ ++EL ++ +KPG WG+ + R + V +++ + T G ++ VH +W +
Sbjct: 143 EGVYELATFQMKPGGPALWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNRVHVLWWNES 202
Query: 246 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 371
+ R R+++ +P V +V + + +L T FS
Sbjct: 203 ADSRAAGRHKSHEDPRVVAAVRESVNYLVSQQNMLLIPTSFS 244
>sp|Q9CQE1|NPS3B_MOUSE Protein NipSnap3B
Length = 247
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +3
Query: 18 QILFPFSYWPEIKPRQSDDSIFELRSYTLKPGTMIEWGNYWARGIRVRKQHSEPIAGLFT 197
Q+ PF+ PRQS+ + +E R+Y LKP E+ + + +R HSE I G +T
Sbjct: 20 QVCSPFA----TGPRQSNGTFYEFRTYFLKPSKTNEFLENFKNSVHLRTAHSEMI-GYWT 74
Query: 198 --HVGDIHMVHHMWAYKDLEHRKKMRNEAWRNPGWDE 302
G + V H+W Y + HR +R ++ W E
Sbjct: 75 VEFGGRTNRVFHIWKYDNFAHRTAVRKALAKDKEWQE 111
Score = 42.4 bits (98), Expect = 7e-04
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +3
Query: 72 DSIFELRSYTLKPGTMIEWGNYWARGI--RVRKQHSEPIAGLFTHVGDIHMVHHMWAYKD 245
+ ++EL ++ +KPG WGN + R + V +S + T G ++ VH +W +
Sbjct: 143 EGVYELATFQMKPGGPALWGNAFKRAVNAHVELGYSTLVGVFHTEYGALNRVHVLWWNES 202
Query: 246 LEHRKKMRNEAWRNPGWDECVLHTVPLIRHMNSNILRATPFS 371
+ R R+ + +P V +V + + L T FS
Sbjct: 203 ADSRAAGRHWSHEDPRVVAAVRESVSYLESQQNTFLIPTSFS 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,377,868
Number of Sequences: 369166
Number of extensions: 1068671
Number of successful extensions: 2634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2622
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)