Planaria EST Database

DrC_00414

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00414
         (486 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51637|CAV3_MOUSE  Caveolin-3 (M-caveolin)                     108   7e-24
sp|P51638|CAV3_RAT  Caveolin-3                                    106   3e-23
sp|P56539|CAV3_HUMAN  Caveolin-3 (M-caveolin)                     105   7e-23
sp|Q9YGM8|CAV1_FUGRU  Caveolin-1                                  102   6e-22
sp|Q6RVA9|CAV1_PIG  Caveolin-1                                    100   2e-21
sp|P33724|CAV1_CANFA  Caveolin-1 (Vesicular integral-membran...   100   2e-21
sp|Q03135|CAV1_HUMAN  Caveolin-1                                   99   4e-21
sp|P79132|CAV1_BOVIN  Caveolin-1                                   98   9e-21
sp|P49817|CAV1_MOUSE  Caveolin-1                                   97   2e-20
sp|P35431|CAV1_CHICK  Caveolin-1                                   96   4e-20

>sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin)
          Length = 151

 Score =  108 bits (270), Expect = 7e-24
 Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+NIN  I +  +ED IAEPEG  S D +WK SF  F   +  CYR +S LLG
Sbjct: 22  IDLVNRDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWKVSFTTFTVSKYWCYRLLSTLLG 81

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           + + L WG  +ACI+ CHIW ++PCIK Y++    +  I    +   C P     G    
Sbjct: 82  VPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCS 141

Query: 372 HFRITM 389
           + ++ +
Sbjct: 142 NIKVVL 147

>sp|P51638|CAV3_RAT Caveolin-3
          Length = 151

 Score =  106 bits (264), Expect = 3e-23
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+NIN  I +  +ED IAEPEG  S D +W+ S+  F   +  CYR +S LLG
Sbjct: 22  IDLVNRDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWRVSYTTFTVSKYWCYRLLSTLLG 81

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           + + L WG  +ACI+ CHIW ++PCIK Y++    +  I    +   C P     G    
Sbjct: 82  VPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCS 141

Query: 372 HFRITM 389
           + ++ +
Sbjct: 142 NIKVVL 147

>sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin)
          Length = 151

 Score =  105 bits (261), Expect = 7e-23
 Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+NIN  I +  +ED IAEP G  S D +WK S+  F   +  CYR +S LLG
Sbjct: 22  IDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLG 81

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           + + L WG  +ACI+ CHIW ++PCIK Y++    +  I    +   C P     G    
Sbjct: 82  VPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCS 141

Query: 372 HFRITMDK 395
             ++ + K
Sbjct: 142 SIKVVLRK 149

>sp|Q9YGM8|CAV1_FUGRU Caveolin-1
          Length = 181

 Score =  102 bits (253), Expect = 6e-22
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP ++N  + +  +ED IAEP G  S D +WKASF  F   +  CYR ++ L+G
Sbjct: 52  IDLVNRDPTHLNDDVVKVDFEDVIAEPAGTYSFDGVWKASFTTFTVTKYWCYRLLTALVG 111

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PC+K Y++    + ++    V   C P  E  G C G
Sbjct: 112 IPLALIWGIFFAILSFIHIWAVVPCVKSYLIEIHCISRVYSICVHTFCDPLFEAMGKCLG 171

Query: 372 HFRITMDK 395
             RI   K
Sbjct: 172 GVRIRTSK 179

>sp|Q6RVA9|CAV1_PIG Caveolin-1
          Length = 178

 Score =  100 bits (249), Expect = 2e-21
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+++N  + +  +ED IAEPEG  S D +WKASF  F   +   YR +S L G
Sbjct: 49  IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PCIK +++    + ++    V   C P  E  G    
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFS 168

Query: 372 HFRITMDK 395
           + RI M K
Sbjct: 169 NIRINMQK 176

>sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membrane protein VIP21)
          Length = 178

 Score =  100 bits (248), Expect = 2e-21
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+++N  + +  +ED IAEPEG  S D +WKASF  F   +   YR +S L G
Sbjct: 49  IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PCIK +++    + ++    V   C P  E  G    
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPFFEAVGKIFS 168

Query: 372 HFRITMDK 395
           + RI M K
Sbjct: 169 NIRINMQK 176

>sp|Q03135|CAV1_HUMAN Caveolin-1
          Length = 178

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+++N  + +  +ED IAEPEG  S D +WKASF  F   +   YR +S L G
Sbjct: 49  IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PCIK +++    + ++    V   C P  E  G    
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFS 168

Query: 372 HFRITMDK 395
           + RI + K
Sbjct: 169 NVRINLQK 176

>sp|P79132|CAV1_BOVIN Caveolin-1
          Length = 178

 Score = 98.2 bits (243), Expect = 9e-21
 Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+++N  + +  +ED IAEPEG  S D +WKASF  F   +   YR +S L G
Sbjct: 49  IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PCIK +++    + ++    V   C P  E  G    
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFS 168

Query: 372 HFRITMDK 395
           + RI   K
Sbjct: 169 NIRINTQK 176

>sp|P49817|CAV1_MOUSE Caveolin-1
          Length = 178

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+++N  + +  +ED IAEPEG  S D +WKASF  F   +   YR +S + G
Sbjct: 49  IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSTIFG 108

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PCIK +++    + ++    V   C P  E  G    
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFS 168

Query: 372 HFRITMDK 395
           + RI+  K
Sbjct: 169 NIRISTQK 176

>sp|P35431|CAV1_CHICK Caveolin-1
          Length = 178

 Score = 95.9 bits (237), Expect = 4e-20
 Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
 Frame = +3

Query: 15  LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
           +DL NRDP+++N  + +  +ED IAEPEG  S D +WKASF  F   +   YR +S + G
Sbjct: 49  IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSAIFG 108

Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
           I + L WG  +A ++  HIW ++PCI+ Y++    + ++    +   C P  E  G    
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIRSYLIEIQCISRVYSICIHTFCDPLFEAMGKVFS 168

Query: 372 HFRITMDK 395
             R T+ K
Sbjct: 169 SIRATVRK 176

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,468,020
Number of Sequences: 369166
Number of extensions: 1088246
Number of successful extensions: 3133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3094
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00414

  1. Dr_sW_011_C08
  2. Dr_sW_008_G11
  3. Dr_sW_016_L14