Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_C08
(480 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin) 108 6e-24
sp|P51638|CAV3_RAT Caveolin-3 106 3e-23
sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin) 105 7e-23
sp|Q9YGM8|CAV1_FUGRU Caveolin-1 102 6e-22
sp|Q6RVA9|CAV1_PIG Caveolin-1 100 2e-21
sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membran... 100 2e-21
sp|Q03135|CAV1_HUMAN Caveolin-1 99 4e-21
sp|P79132|CAV1_BOVIN Caveolin-1 98 9e-21
sp|P49817|CAV1_MOUSE Caveolin-1 97 2e-20
sp|P35431|CAV1_CHICK Caveolin-1 96 4e-20
>sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin)
Length = 151
Score = 108 bits (270), Expect = 6e-24
Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+NIN I + +ED IAEPEG S D +WK SF F + CYR +S LLG
Sbjct: 22 IDLVNRDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWKVSFTTFTVSKYWCYRLLSTLLG 81
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
+ + L WG +ACI+ CHIW ++PCIK Y++ + I + C P G
Sbjct: 82 VPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCS 141
Query: 372 HFRITM 389
+ ++ +
Sbjct: 142 NIKVVL 147
>sp|P51638|CAV3_RAT Caveolin-3
Length = 151
Score = 106 bits (264), Expect = 3e-23
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+NIN I + +ED IAEPEG S D +W+ S+ F + CYR +S LLG
Sbjct: 22 IDLVNRDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWRVSYTTFTVSKYWCYRLLSTLLG 81
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
+ + L WG +ACI+ CHIW ++PCIK Y++ + I + C P G
Sbjct: 82 VPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCS 141
Query: 372 HFRITM 389
+ ++ +
Sbjct: 142 NIKVVL 147
>sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin)
Length = 151
Score = 105 bits (261), Expect = 7e-23
Identities = 50/128 (39%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+NIN I + +ED IAEP G S D +WK S+ F + CYR +S LLG
Sbjct: 22 IDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLG 81
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
+ + L WG +ACI+ CHIW ++PCIK Y++ + I + C P G
Sbjct: 82 VPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCS 141
Query: 372 HFRITMDK 395
++ + K
Sbjct: 142 SIKVVLRK 149
>sp|Q9YGM8|CAV1_FUGRU Caveolin-1
Length = 181
Score = 102 bits (253), Expect = 6e-22
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP ++N + + +ED IAEP G S D +WKASF F + CYR ++ L+G
Sbjct: 52 IDLVNRDPTHLNDDVVKVDFEDVIAEPAGTYSFDGVWKASFTTFTVTKYWCYRLLTALVG 111
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PC+K Y++ + ++ V C P E G C G
Sbjct: 112 IPLALIWGIFFAILSFIHIWAVVPCVKSYLIEIHCISRVYSICVHTFCDPLFEAMGKCLG 171
Query: 372 HFRITMDK 395
RI K
Sbjct: 172 GVRIRTSK 179
>sp|Q6RVA9|CAV1_PIG Caveolin-1
Length = 178
Score = 100 bits (249), Expect = 2e-21
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L G
Sbjct: 49 IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PCIK +++ + ++ V C P E G
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFS 168
Query: 372 HFRITMDK 395
+ RI M K
Sbjct: 169 NIRINMQK 176
>sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membrane protein VIP21)
Length = 178
Score = 100 bits (248), Expect = 2e-21
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L G
Sbjct: 49 IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PCIK +++ + ++ V C P E G
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPFFEAVGKIFS 168
Query: 372 HFRITMDK 395
+ RI M K
Sbjct: 169 NIRINMQK 176
>sp|Q03135|CAV1_HUMAN Caveolin-1
Length = 178
Score = 99.4 bits (246), Expect = 4e-21
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L G
Sbjct: 49 IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PCIK +++ + ++ V C P E G
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFS 168
Query: 372 HFRITMDK 395
+ RI + K
Sbjct: 169 NVRINLQK 176
>sp|P79132|CAV1_BOVIN Caveolin-1
Length = 178
Score = 98.2 bits (243), Expect = 9e-21
Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L G
Sbjct: 49 IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFG 108
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PCIK +++ + ++ V C P E G
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFS 168
Query: 372 HFRITMDK 395
+ RI K
Sbjct: 169 NIRINTQK 176
>sp|P49817|CAV1_MOUSE Caveolin-1
Length = 178
Score = 97.1 bits (240), Expect = 2e-20
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+++N + + +ED IAEPEG S D +WKASF F + YR +S + G
Sbjct: 49 IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSTIFG 108
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PCIK +++ + ++ V C P E G
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFS 168
Query: 372 HFRITMDK 395
+ RI+ K
Sbjct: 169 NIRISTQK 176
>sp|P35431|CAV1_CHICK Caveolin-1
Length = 178
Score = 95.9 bits (237), Expect = 4e-20
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Frame = +3
Query: 15 LDLENRDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLG 191
+DL NRDP+++N + + +ED IAEPEG S D +WKASF F + YR +S + G
Sbjct: 49 IDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSAIFG 108
Query: 192 ICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGG 371
I + L WG +A ++ HIW ++PCI+ Y++ + ++ + C P E G
Sbjct: 109 IPMALIWGIYFAILSFLHIWAVVPCIRSYLIEIQCISRVYSICIHTFCDPLFEAMGKVFS 168
Query: 372 HFRITMDK 395
R T+ K
Sbjct: 169 SIRATVRK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,984,749
Number of Sequences: 369166
Number of extensions: 1078387
Number of successful extensions: 3102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3063
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)