Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_L14
(363 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin) 69 3e-12
sp|Q9YGM8|CAV1_FUGRU Caveolin-1 69 3e-12
sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin) 68 6e-12
sp|P51638|CAV3_RAT Caveolin-3 68 8e-12
sp|Q6RVA9|CAV1_PIG Caveolin-1 64 1e-10
sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membran... 63 2e-10
sp|Q03135|CAV1_HUMAN Caveolin-1 62 3e-10
sp|P79132|CAV1_BOVIN Caveolin-1 61 7e-10
sp|P49817|CAV1_MOUSE Caveolin-1 60 2e-09
sp|P35431|CAV1_CHICK Caveolin-1 59 4e-09
>sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin)
Length = 151
Score = 68.9 bits (167), Expect = 3e-12
Identities = 29/87 (33%), Positives = 45/87 (51%)
Frame = +3
Query: 6 SFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKI 185
SF F + CYR +S LLG+ + L WG +ACI+ CHIW ++PCIK Y++ + I
Sbjct: 61 SFTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI 120
Query: 186 IKAQVDCCCGPCAEICGLCGGHFRITM 266
+ C P G + ++ +
Sbjct: 121 YSLCIRTFCNPLFAALGQVCSNIKVVL 147
>sp|Q9YGM8|CAV1_FUGRU Caveolin-1
Length = 181
Score = 68.9 bits (167), Expect = 3e-12
Identities = 31/90 (34%), Positives = 47/90 (52%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + CYR ++ L+GI + L WG +A ++ HIW ++PC+K Y++ + +
Sbjct: 90 ASFTTFTVTKYWCYRLLTALVGIPLALIWGIFFAILSFIHIWAVVPCVKSYLIEIHCISR 149
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ V C P E G C G RI K
Sbjct: 150 VYSICVHTFCDPLFEAMGKCLGGVRIRTSK 179
>sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin)
Length = 151
Score = 68.2 bits (165), Expect = 6e-12
Identities = 29/89 (32%), Positives = 45/89 (50%)
Frame = +3
Query: 6 SFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKI 185
S+ F + CYR +S LLG+ + L WG +ACI+ CHIW ++PCIK Y++ + I
Sbjct: 61 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI 120
Query: 186 IKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ C P G ++ + K
Sbjct: 121 YSLCIRTFCNPLFAALGQVCSSIKVVLRK 149
>sp|P51638|CAV3_RAT Caveolin-3
Length = 151
Score = 67.8 bits (164), Expect = 8e-12
Identities = 28/87 (32%), Positives = 45/87 (51%)
Frame = +3
Query: 6 SFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKKI 185
S+ F + CYR +S LLG+ + L WG +ACI+ CHIW ++PCIK Y++ + I
Sbjct: 61 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI 120
Query: 186 IKAQVDCCCGPCAEICGLCGGHFRITM 266
+ C P G + ++ +
Sbjct: 121 YSLCIRTFCNPLFAALGQVCSNIKVVL 147
>sp|Q6RVA9|CAV1_PIG Caveolin-1
Length = 178
Score = 63.5 bits (153), Expect = 1e-10
Identities = 30/90 (33%), Positives = 45/90 (50%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + YR +S L GI + L WG +A ++ HIW ++PCIK +++ + +
Sbjct: 87 ASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISR 146
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ V C P E G + RI M K
Sbjct: 147 VYSIYVHTFCDPLFEAIGKIFSNIRINMQK 176
>sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membrane protein VIP21)
Length = 178
Score = 63.2 bits (152), Expect = 2e-10
Identities = 30/90 (33%), Positives = 45/90 (50%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + YR +S L GI + L WG +A ++ HIW ++PCIK +++ + +
Sbjct: 87 ASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISR 146
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ V C P E G + RI M K
Sbjct: 147 VYSIYVHTFCDPFFEAVGKIFSNIRINMQK 176
>sp|Q03135|CAV1_HUMAN Caveolin-1
Length = 178
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/90 (32%), Positives = 45/90 (50%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + YR +S L GI + L WG +A ++ HIW ++PCIK +++ + +
Sbjct: 87 ASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISR 146
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ V C P E G + RI + K
Sbjct: 147 VYSIYVHTVCDPLFEAVGKIFSNVRINLQK 176
>sp|P79132|CAV1_BOVIN Caveolin-1
Length = 178
Score = 61.2 bits (147), Expect = 7e-10
Identities = 29/90 (32%), Positives = 44/90 (48%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + YR +S L GI + L WG +A ++ HIW ++PCIK +++ + +
Sbjct: 87 ASFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISR 146
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ V C P E G + RI K
Sbjct: 147 VYSIYVHTFCDPLFEAIGKIFSNIRINTQK 176
>sp|P49817|CAV1_MOUSE Caveolin-1
Length = 178
Score = 60.1 bits (144), Expect = 2e-09
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + YR +S + GI + L WG +A ++ HIW ++PCIK +++ + +
Sbjct: 87 ASFTTFTVTKYWFYRLLSTIFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISR 146
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ V C P E G + RI+ K
Sbjct: 147 VYSIYVHTFCDPLFEAIGKIFSNIRISTQK 176
>sp|P35431|CAV1_CHICK Caveolin-1
Length = 178
Score = 58.9 bits (141), Expect = 4e-09
Identities = 27/90 (30%), Positives = 44/90 (48%)
Frame = +3
Query: 3 ASFKCFNGGRDCCYRFISGLLGICIGLYWGCCYACIACCHIWCLIPCIKIYVLHCALLKK 182
ASF F + YR +S + GI + L WG +A ++ HIW ++PCI+ Y++ + +
Sbjct: 87 ASFTTFTVTKYWFYRLLSAIFGIPMALIWGIYFAILSFLHIWAVVPCIRSYLIEIQCISR 146
Query: 183 IIKAQVDCCCGPCAEICGLCGGHFRITMDK 272
+ + C P E G R T+ K
Sbjct: 147 VYSICIHTFCDPLFEAMGKVFSSIRATVRK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,773,586
Number of Sequences: 369166
Number of extensions: 722576
Number of successful extensions: 2253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2226
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)