Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_G11
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin) 101 9e-22
sp|P51638|CAV3_RAT Caveolin-3 99 4e-21
sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin) 98 1e-20
sp|Q9YGM8|CAV1_FUGRU Caveolin-1 95 8e-20
sp|Q6RVA9|CAV1_PIG Caveolin-1 93 2e-19
sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membran... 93 3e-19
sp|Q03135|CAV1_HUMAN Caveolin-1 92 5e-19
sp|P79132|CAV1_BOVIN Caveolin-1 91 1e-18
sp|P49817|CAV1_MOUSE Caveolin-1 90 3e-18
sp|P35431|CAV1_CHICK Caveolin-1 89 6e-18
>sp|P51637|CAV3_MOUSE Caveolin-3 (M-caveolin)
Length = 151
Score = 101 bits (251), Expect = 9e-22
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+NIN I + +ED IAEPEG S D +WK SF F + CYR +S LLG+ + L
Sbjct: 27 RDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWKVSFTTFTVSKYWCYRLLSTLLGVPLAL 86
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +ACI+ CHIW + PCIK Y++ + I + C P G + ++
Sbjct: 87 LWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSNIKVV 146
Query: 359 M 361
+
Sbjct: 147 L 147
>sp|P51638|CAV3_RAT Caveolin-3
Length = 151
Score = 99.0 bits (245), Expect = 4e-21
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+NIN I + +ED IAEPEG S D +W+ S+ F + CYR +S LLG+ + L
Sbjct: 27 RDPKNINEDIVKVDFEDVIAEPEGTYSFDGVWRVSYTTFTVSKYWCYRLLSTLLGVPLAL 86
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +ACI+ CHIW + PCIK Y++ + I + C P G + ++
Sbjct: 87 LWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSNIKVV 146
Query: 359 M 361
+
Sbjct: 147 L 147
>sp|P56539|CAV3_HUMAN Caveolin-3 (M-caveolin)
Length = 151
Score = 97.8 bits (242), Expect = 1e-20
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+NIN I + +ED IAEP G S D +WK S+ F + CYR +S LLG+ + L
Sbjct: 27 RDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLAL 86
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +ACI+ CHIW + PCIK Y++ + I + C P G ++
Sbjct: 87 LWGFLFACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSSIKVV 146
Query: 359 MDK 367
+ K
Sbjct: 147 LRK 149
>sp|Q9YGM8|CAV1_FUGRU Caveolin-1
Length = 181
Score = 94.7 bits (234), Expect = 8e-20
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP ++N + + +ED IAEP G S D +WKASF F + CYR ++ L+GI + L
Sbjct: 57 RDPTHLNDDVVKVDFEDVIAEPAGTYSFDGVWKASFTTFTVTKYWCYRLLTALVGIPLAL 116
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PC+K Y++ + ++ V C P E G C G RI
Sbjct: 117 IWGIFFAILSFIHIWAVVPCVKSYLIEIHCISRVYSICVHTFCDPLFEAMGKCLGGVRIR 176
Query: 359 MDK 367
K
Sbjct: 177 TSK 179
>sp|Q6RVA9|CAV1_PIG Caveolin-1
Length = 178
Score = 93.2 bits (230), Expect = 2e-19
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L GI + L
Sbjct: 54 RDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMAL 113
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PCIK +++ + ++ V C P E G + RI
Sbjct: 114 IWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRIN 173
Query: 359 MDK 367
M K
Sbjct: 174 MQK 176
>sp|P33724|CAV1_CANFA Caveolin-1 (Vesicular integral-membrane protein VIP21)
Length = 178
Score = 92.8 bits (229), Expect = 3e-19
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L GI + L
Sbjct: 54 RDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMAL 113
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PCIK +++ + ++ V C P E G + RI
Sbjct: 114 IWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPFFEAVGKIFSNIRIN 173
Query: 359 MDK 367
M K
Sbjct: 174 MQK 176
>sp|Q03135|CAV1_HUMAN Caveolin-1
Length = 178
Score = 92.0 bits (227), Expect = 5e-19
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L GI + L
Sbjct: 54 RDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMAL 113
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PCIK +++ + ++ V C P E G + RI
Sbjct: 114 IWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRIN 173
Query: 359 MDK 367
+ K
Sbjct: 174 LQK 176
>sp|P79132|CAV1_BOVIN Caveolin-1
Length = 178
Score = 90.9 bits (224), Expect = 1e-18
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+++N + + +ED IAEPEG S D +WKASF F + YR +S L GI + L
Sbjct: 54 RDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMAL 113
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PCIK +++ + ++ V C P E G + RI
Sbjct: 114 IWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRIN 173
Query: 359 MDK 367
K
Sbjct: 174 TQK 176
>sp|P49817|CAV1_MOUSE Caveolin-1
Length = 178
Score = 89.7 bits (221), Expect = 3e-18
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+++N + + +ED IAEPEG S D +WKASF F + YR +S + GI + L
Sbjct: 54 RDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSTIFGIPMAL 113
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PCIK +++ + ++ V C P E G + RI+
Sbjct: 114 IWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTFCDPLFEAIGKIFSNIRIS 173
Query: 359 MDK 367
K
Sbjct: 174 TQK 176
>sp|P35431|CAV1_CHICK Caveolin-1
Length = 178
Score = 88.6 bits (218), Expect = 6e-18
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 RDPRNINSHI-EATWEDNIAEPEGVKSCDCLWKASFKCFNGGRDCCYRFISGLLGICIGL 178
RDP+++N + + +ED IAEPEG S D +WKASF F + YR +S + GI + L
Sbjct: 54 RDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSAIFGIPMAL 113
Query: 179 YWGCCYACIACCHIWCLTPCIKIYVLHCALLKKIIKAQVDCCCGPCAEICGLCGGHFRIT 358
WG +A ++ HIW + PCI+ Y++ + ++ + C P E G R T
Sbjct: 114 IWGIYFAILSFLHIWAVVPCIRSYLIEIQCISRVYSICIHTFCDPLFEAMGKVFSSIRAT 173
Query: 359 MDK 367
+ K
Sbjct: 174 VRK 176
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,852,869
Number of Sequences: 369166
Number of extensions: 1048867
Number of successful extensions: 3008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2977
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)