Planaria EST Database

DrC_00363

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00363
         (754 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01529|DPOM_PODAN  Probable DNA polymerase                      35   0.28 
sp|Q09760|CUL3_SCHPO  Cullin-3 homolog (Cul-3)                     34   0.37 
sp|P07749|FCA1_TRYCR  Flagellar calcium-binding protein (FCA...    30   5.3  
sp|Q9PK91|SYV_CHLMU  Valyl-tRNA synthetase (Valine--tRNA lig...    30   7.0  
sp|Q37883|TERM_BPB03  DNA terminal protein (Protein GP3)           30   9.1  

>sp|Q01529|DPOM_PODAN Probable DNA polymerase
          Length = 1197

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
 Frame = +3

Query: 93  KFDEIIGHLEDIIVGAEFQKIHN-------DLF*LRIVNH----LITVMKINSVTQQFTM 239
           KF E+ G+  ++I G +F KI N       DL+ ++  +     LIT   +NS+  +F M
Sbjct: 748 KFAEVNGYNIEVIKGYQFNKIDNLFSSYVDDLYKIKANSEGSEKLITKFLLNSLLGRFGM 807

Query: 240 IILKLSKDI*LMNYAKE 290
            I KL  DI  +  AK+
Sbjct: 808 SIFKLKTDIVSVEKAKK 824

>sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3)
          Length = 785

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +2

Query: 248 EIIERYLTDELCKRMLNFSM--EDFMVQIIEMKDQLVGEVFEMLLT--FTDFHLFKELML 415
           ++ E+Y    L KR+LN      D  + +I    Q  G VF   L   F D +L +EL+ 
Sbjct: 463 DVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELLQ 522

Query: 416 DYK--KAKSGAYADLNLGISV 472
           +YK   A   A   L+L +S+
Sbjct: 523 EYKHNSALQSAKPALDLNVSI 543

>sp|P07749|FCA1_TRYCR Flagellar calcium-binding protein (FCABP) (1F8 protein) (P24) (29
           kDa flagella protein) (F29) (24 kDa antigen) (ALC-1
           antigen)
          Length = 211

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
 Frame = +2

Query: 185 ESFDNSDENKFCYTTIHNDYIEIIE--------RYLTDE-------LCKRMLNFSMEDFM 319
           + FD ++  K CY  +H+  +E+++        R +T         L  ++ N   EDF 
Sbjct: 55  KKFDKNETGKLCYDEVHSGCLEVLKLDEFTPRVRDITKRAFDKARALGSKLENKGSEDF- 113

Query: 320 VQIIEMKDQL--VGEVFEMLLTFTDFHLFKELMLDYKKAK 433
           V+ +E +  L  + + FE+ + F +      +++D ++ K
Sbjct: 114 VEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEELK 153

>sp|Q9PK91|SYV_CHLMU Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
          Length = 939

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 251 IIERYLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFEML 373
           ++ER+L   L KR  +FS E+F+  + E K++    +   L
Sbjct: 94  VVERHLRSSLGKRRTDFSREEFLKHVWEWKEKSQNVILSQL 134

>sp|Q37883|TERM_BPB03 DNA terminal protein (Protein GP3)
          Length = 266

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = +2

Query: 230 IHNDYIEIIER-----YLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFE 367
           +H ++IEI+E+     +LTDEL +R+     +DF  ++  + D++  E F+
Sbjct: 182 MHQNFIEIVEKSFNSYWLTDELVERLKKIPPDDFF-ELYLIFDEISFEYFD 231

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,105,744
Number of Sequences: 369166
Number of extensions: 1596653
Number of successful extensions: 3242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3241
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00363

  1. Dr_sW_009_J12
  2. Dr_sW_015_H18
  3. Dr_sW_007_C22