Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C22
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3) 34 0.27
sp|P06812|TERM_BPNF DNA terminal protein (Protein GP3) 32 1.0
sp|Q37883|TERM_BPB03 DNA terminal protein (Protein GP3) 30 3.9
sp|Q67N94|EFP_SYMTH Elongation factor P (EF-P) 30 3.9
sp|P12577|L_PI3H4 Large structural protein (L protein) (Tra... 30 3.9
sp|Q9PK91|SYV_CHLMU Valyl-tRNA synthetase (Valine--tRNA lig... 30 5.1
sp|P07749|FCA1_TRYCR Flagellar calcium-binding protein (FCA... 29 8.8
>sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3)
Length = 785
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 126 EIIERYLTDELCKRMLNFSM--EDFMVQIIEMKDQLVGEVFEMLLT--FTDFHLFKELML 293
++ E+Y L KR+LN D + +I Q G VF L F D +L +EL+
Sbjct: 463 DVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELLQ 522
Query: 294 DYK--KAKSGAYADLNLGISV 350
+YK A A L+L +S+
Sbjct: 523 EYKHNSALQSAKPALDLNVSI 543
>sp|P06812|TERM_BPNF DNA terminal protein (Protein GP3)
Length = 266
Score = 32.3 bits (72), Expect = 1.0
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +3
Query: 81 DEYKFCYTTIHNDYIEIIER-----YLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFE 245
D Y T +H ++IEI+E+ +L+DEL +R+ +DF ++ M D++ E F+
Sbjct: 173 DYYDRRMTQMHQNFIEIVEKSFNSDWLSDELVERLKKIPPDDFF-ELYLMFDEISFEYFD 231
>sp|Q37883|TERM_BPB03 DNA terminal protein (Protein GP3)
Length = 266
Score = 30.4 bits (67), Expect = 3.9
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +3
Query: 81 DEYKFCYTTIHNDYIEIIER-----YLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFE 245
D Y +H ++IEI+E+ +LTDEL +R+ +DF ++ + D++ E F+
Sbjct: 173 DYYDRRMAQMHQNFIEIVEKSFNSYWLTDELVERLKKIPPDDFF-ELYLIFDEISFEYFD 231
>sp|Q67N94|EFP_SYMTH Elongation factor P (EF-P)
Length = 185
Score = 30.4 bits (67), Expect = 3.9
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +3
Query: 84 EYKFCYTT------IHNDYIEIIERYLTDELCKRMLNFSMEDFMVQIIEMKDQLVG 233
EY+F Y ++N+ E IE LT+E NF +E+ VQI K Q++G
Sbjct: 69 EYQFLYADQGVWVFMNNETFEQIE--LTEEQVGNAPNFLLENMTVQIASWKGQVIG 122
>sp|P12577|L_PI3H4 Large structural protein (L protein) (Transcriptase) (Replicase)
[Includes: RNA-directed RNA polymerase ; mRNA
(guanine-N(7)-)-methyltransferase ; mRNA
guanylyltransferase ]
Length = 2233
Score = 30.4 bits (67), Expect = 3.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 57 NCESFDNSDEYKFCYTTIHNDYIEIIERYLTDELCKRMLNFSME 188
N S S +++F T I+ND E + +LT +L K LN+ E
Sbjct: 631 NLSSNQKSKKFEFKSTDIYNDGYETVSCFLTTDLKKYCLNWRYE 674
>sp|Q9PK91|SYV_CHLMU Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 939
Score = 30.0 bits (66), Expect = 5.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 129 IIERYLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFEML 251
++ER+L L KR +FS E+F+ + E K++ + L
Sbjct: 94 VVERHLRSSLGKRRTDFSREEFLKHVWEWKEKSQNVILSQL 134
>sp|P07749|FCA1_TRYCR Flagellar calcium-binding protein (FCABP) (1F8 protein) (P24) (29
kDa flagella protein) (F29) (24 kDa antigen) (ALC-1
antigen)
Length = 211
Score = 29.3 bits (64), Expect = 8.8
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Frame = +3
Query: 63 ESFDNSDEYKFCYTTIHNDYIEIIE--------RYLTDE-------LCKRMLNFSMEDFM 197
+ FD ++ K CY +H+ +E+++ R +T L ++ N EDF
Sbjct: 55 KKFDKNETGKLCYDEVHSGCLEVLKLDEFTPRVRDITKRAFDKARALGSKLENKGSEDF- 113
Query: 198 VQIIEMKDQL--VGEVFEMLLTFTDFHLFKELMLDYKKAK 311
V+ +E + L + + FE+ + F + +++D ++ K
Sbjct: 114 VEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEELK 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,059,171
Number of Sequences: 369166
Number of extensions: 1317290
Number of successful extensions: 2453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)