Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J12
(752 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3) 34 0.37
sp|P12577|L_PI3H4 Large structural protein (L protein) (Tra... 33 0.63
sp|P07749|FCA1_TRYCR Flagellar calcium-binding protein (FCA... 30 5.3
sp|P38109|YBY9_YEAST Putative serine carboxypeptidase in ES... 30 5.3
sp|Q57954|Y534_METJA Hypothetical protein MJ0534 30 5.3
sp|Q9ZDC2|MURD_RICPR UDP-N-acetylmuramoylalanine--D-glutama... 30 5.3
sp|P32504|CBF3A_YEAST Centromere DNA-binding protein comple... 30 7.0
sp|Q9PK91|SYV_CHLMU Valyl-tRNA synthetase (Valine--tRNA lig... 30 7.0
sp|Q37883|TERM_BPB03 DNA terminal protein (Protein GP3) 30 9.1
>sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3)
Length = 785
Score = 34.3 bits (77), Expect = 0.37
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 246 EIIERYLTDELCKRMLNFSM--EDFMVQIIEMKDQLVGEVFEMLLT--FTDFHLFKELML 413
++ E+Y L KR+LN D + +I Q G VF L F D +L +EL+
Sbjct: 463 DVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELLQ 522
Query: 414 DYK--KAKSGAYADLNLGISV 470
+YK A A L+L +S+
Sbjct: 523 EYKHNSALQSAKPALDLNVSI 543
>sp|P12577|L_PI3H4 Large structural protein (L protein) (Transcriptase) (Replicase)
[Includes: RNA-directed RNA polymerase ; mRNA
(guanine-N(7)-)-methyltransferase ; mRNA
guanylyltransferase ]
Length = 2233
Score = 33.5 bits (75), Expect = 0.63
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 63 IDCNGVPSQSK-FDEIIGHLEDIIVGAEFQKIHNDFLTKNCESFDNSDENKFCYTTIHND 239
I +GVP ++ ++ H +D+ K +N N S S + +F T I+ND
Sbjct: 599 ISISGVPRYNEVYNNSKSHTDDL-------KTYNKISNLNLSSNQKSKKFEFKSTDIYND 651
Query: 240 YIEIIERYLTDELCKRMLNFSME 308
E + +LT +L K LN+ E
Sbjct: 652 GYETVSCFLTTDLKKYCLNWRYE 674
>sp|P07749|FCA1_TRYCR Flagellar calcium-binding protein (FCABP) (1F8 protein) (P24) (29
kDa flagella protein) (F29) (24 kDa antigen) (ALC-1
antigen)
Length = 211
Score = 30.4 bits (67), Expect = 5.3
Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Frame = +3
Query: 183 ESFDNSDENKFCYTTIHNDYIEIIE--------RYLTDE-------LCKRMLNFSMEDFM 317
+ FD ++ K CY +H+ +E+++ R +T L ++ N EDF
Sbjct: 55 KKFDKNETGKLCYDEVHSGCLEVLKLDEFTPRVRDITKRAFDKARALGSKLENKGSEDF- 113
Query: 318 VQIIEMKDQL--VGEVFEMLLTFTDFHLFKELMLDYKKAK 431
V+ +E + L + + FE+ + F + +++D ++ K
Sbjct: 114 VEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEELK 153
>sp|P38109|YBY9_YEAST Putative serine carboxypeptidase in ESR1-IRA1 intergenic region
Length = 508
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 39 DEDSDEILIDCNGVPSQSKFDEIIGHLEDIIVGAEFQKIHNDFLTKN 179
D +D I++ NG P S F ++ L +GA+ + IHN + N
Sbjct: 116 DPANDPIILWLNGGPGCSSFTGLLFELGPSSIGADMKPIHNPYSWNN 162
>sp|Q57954|Y534_METJA Hypothetical protein MJ0534
Length = 391
Score = 30.4 bits (67), Expect = 5.3
Identities = 33/166 (19%), Positives = 73/166 (43%), Gaps = 38/166 (22%)
Frame = +3
Query: 45 DSDEILIDCNGVPSQSKFDEIIGHLEDI-------IVGAEFQKIHNDFLTKNCESFDNSD 203
D + ++ID + FDE++ +L+D+ I+ HN+ + K E
Sbjct: 44 DKNNVIIDTTRI---KYFDELLSYLKDVANLKLDYIISNHISPDHNECIEKLIEL----T 96
Query: 204 ENKFCYTTIHNDYIE-----------IIE------------RYLTDELCKRMLNFSMEDF 314
E K T I Y++ I++ +++TD+ C+ ML + +ED
Sbjct: 97 EAKIVTTKIRKYYLDAQFNTKDWEFVIVKNGDELNIGNRTLKFITDDKCEYMLTYCVEDK 156
Query: 315 MV-------QIIEMKDQLVGEV-FEMLLTFTDFHLFKELMLDYKKA 428
++ Q + K+++ ++ +++L ++ F ++L Y+K+
Sbjct: 157 ILFSNDLFSQHVVYKEKIDSDIGHKIMLDAKEY--FANILLPYRKS 200
>sp|Q9ZDC2|MURD_RICPR UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 445
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 159 NDFLTKNCESFDNSDENKFCYTTIHNDYIEIIERYLTDELCKRMLNFSMEDFMVQIIEMK 338
ND++ + FD D++ + I NDY I L + +++ FS+ + I +
Sbjct: 190 NDYIAAKAKIFDRMDKDSYAVINIDNDYCRKIFVLLQKDQSIKLIPFSVTKILKNGISIV 249
Query: 339 DQLV 350
D +
Sbjct: 250 DDKI 253
>sp|P32504|CBF3A_YEAST Centromere DNA-binding protein complex CBF3 subunit A (Kinetochore
protein CTF14) (Centromere-binding factor 2)
Length = 956
Score = 30.0 bits (66), Expect = 7.0
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Frame = +3
Query: 162 DFLTKNCESFDNSDEN---KFC--YTTIHNDYIEIIERYLTDE--------LCKRMLNFS 302
+FL+K C+ +N + N K+ T +H +I+ + T+E LC +L S
Sbjct: 130 NFLSKLCKVHENPNANIDTKYLESVTKLHTHWIDSQKAITTNETNNTNTQVLCPPLLKVS 189
Query: 303 MEDFMVQIIEMKDQLVGEVFEMLLTFTDFHLFKELMLDYKKAKSGAYADLNLG 461
+ + + + ++ E L DF L L L +++ + L LG
Sbjct: 190 LNLWNPETNHLSEKFFKTCSEKLRFLVDFQLRSYLNLSFEERSKIRFGSLKLG 242
>sp|Q9PK91|SYV_CHLMU Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 939
Score = 30.0 bits (66), Expect = 7.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 249 IIERYLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFEML 371
++ER+L L KR +FS E+F+ + E K++ + L
Sbjct: 94 VVERHLRSSLGKRRTDFSREEFLKHVWEWKEKSQNVILSQL 134
>sp|Q37883|TERM_BPB03 DNA terminal protein (Protein GP3)
Length = 266
Score = 29.6 bits (65), Expect = 9.1
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = +3
Query: 228 IHNDYIEIIER-----YLTDELCKRMLNFSMEDFMVQIIEMKDQLVGEVFE 365
+H ++IEI+E+ +LTDEL +R+ +DF ++ + D++ E F+
Sbjct: 182 MHQNFIEIVEKSFNSYWLTDELVERLKKIPPDDFF-ELYLIFDEISFEYFD 231
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,939,673
Number of Sequences: 369166
Number of extensions: 1610198
Number of successful extensions: 3421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3419
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)