Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_H18
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3) 31 1.4
sp|O23051|KAO1_ARATH Ent-kaurenoic acid oxidase 1 (AtKAO1) ... 29 6.9
>sp|Q09760|CUL3_SCHPO Cullin-3 homolog (Cul-3)
Length = 785
Score = 31.2 bits (69), Expect = 1.4
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +3
Query: 3 YLTDELCKRMLNFSM--EDFMVQIIEMKDQLVGEVFEMLLT--FTDFHLFKELMLDYKKA 170
Y L KR+LN D + +I Q G VF L F D +L +EL+ +YK
Sbjct: 468 YYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELLQEYKHN 527
Query: 171 KSGAYADLNLGISVCPLVLEDWP 239
+ A L ++V L WP
Sbjct: 528 SALQSAKPALDLNVSILASTFWP 550
>sp|O23051|KAO1_ARATH Ent-kaurenoic acid oxidase 1 (AtKAO1) (Cytochrome P450 88A3)
Length = 490
Score = 28.9 bits (63), Expect = 6.9
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Frame = +3
Query: 27 RMLNFSMEDFMVQI--IEMKDQLVGEVFEMLLTFTDFHLFKELMLDYKK----------- 167
R++ FS+ F +EM L+ + +++L F D H+ E+ D +K
Sbjct: 364 RVITFSLTAFREAKTDVEMNGYLIPKGWKVLTWFRDVHIDPEVFPDPRKFDPARWDNGFV 423
Query: 168 AKSGAYADLNLGISVCP 218
K+GA+ G +CP
Sbjct: 424 PKAGAFLPFGAGSHLCP 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,806,949
Number of Sequences: 369166
Number of extensions: 1055612
Number of successful extensions: 1834
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1834
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)