DrC_00349
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00349 (1370 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q88P86|HIS8_PSEPK Histidinol-phosphate aminotransferase ... 33 2.5 sp|Q58320|Y910_METJA Hypothetical protein MJ0910 32 3.3 sp|Q97ES6|HIS8_CLOAB Histidinol-phosphate aminotransferase ... 32 3.3 sp|P76162|YDFU_ECOLI Hypothetical protein ydfU 32 3.3 sp|Q40778|C74A2_PARAR Cytochrome P450 74A2 (Allene oxide sy... 32 4.3 sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromo... 32 4.3 sp|Q09920|FIO1_SCHPO Iron transport multicopper oxidase fio... 32 5.6 sp|P22535|COA3_BPPRD Major capsid protein (Protein P3) 32 5.6 sp|Q08352|DHA_BACSU Alanine dehydrogenase (Stage V sporulat... 31 7.4 sp|Q8SL88|RPOA_EUGST DNA-directed RNA polymerase alpha chai... 31 7.4
>sp|Q88P86|HIS8_PSEPK Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) Length = 348 Score = 32.7 bits (73), Expect = 2.5 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 691 KYDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQY 825 +YD +V TL ++R + G P + E L+R+ NS N Y Sbjct: 198 RYDNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFNSY 242
>sp|Q58320|Y910_METJA Hypothetical protein MJ0910 Length = 174 Score = 32.3 bits (72), Expect = 3.3 Identities = 17/53 (32%), Positives = 32/53 (60%) Frame = +1 Query: 52 KGLNYRLPKHHPVIFQSSALFRDLASQFGNKFYQLHEVNLLVNKDEILSISEN 210 KG+N L P F + +++A++FG K+Y++ E ++KD+IL I ++ Sbjct: 121 KGINVILIDTEPQSFIKIGIGKEIANRFGFKYYKIEE----LSKDKILDICKS 169
>sp|Q97ES6|HIS8_CLOAB Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) Length = 352 Score = 32.3 bits (72), Expect = 3.3 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 694 YDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYS 828 Y ++ TL ++R + + G P + E L RV NS+N Y+ Sbjct: 199 YKNLLIVQTLSKSRSLAGLRIGFAMGSPELIEGLSRVKNSINSYT 243
>sp|P76162|YDFU_ECOLI Hypothetical protein ydfU Length = 349 Score = 32.3 bits (72), Expect = 3.3 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +1 Query: 1015 SISKINWTKICTELIDILPELTNASILKLRYDSIDMGVLMDTKYGMNRLNVSSMINMGIK 1194 S+++++W +C +++D LPE + L L + I V ++ L +S++ K Sbjct: 162 SLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKI-CSVYRESDIVPGELTATSILKQRTK 220 Query: 1195 NLVFAGDWLEAPDNFANGLEKS 1260 NL AP +A+ +KS Sbjct: 221 NL--------APLPYAHQQQKS 234
>sp|Q40778|C74A2_PARAR Cytochrome P450 74A2 (Allene oxide synthase) (Rubber particle protein) (RPP) Length = 473 Score = 32.0 bits (71), Expect = 4.3 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 1217 QSPAKTRFFIPIFIILDTFNRFIPYFVSIRTPM 1119 Q P F +P F+I T+N+ YF S+ TP+ Sbjct: 219 QEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPV 251
>sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromosome X Length = 1203 Score = 32.0 bits (71), Expect = 4.3 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 685 NVKYDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYSNA 834 N++Y A V ++ Q+ R ST + GDP ++EPL LN + Y++A Sbjct: 1053 NIRYGVATVENSSQDPTRPPSTDDSL--GDPALHEPLWANLNPHSSYTSA 1100
>sp|Q09920|FIO1_SCHPO Iron transport multicopper oxidase fio1 precursor Length = 622 Score = 31.6 bits (70), Expect = 5.6 Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 26/255 (10%) Frame = +1 Query: 241 HKHNCLYYSDLFKIGKVIKAIKNYDPVNDKYKYSNMTLLEFANRYGAPPNFI-------- 396 H H+ Y D + +I A++ + Y Y ++ + Y P N + Sbjct: 129 HSHDMSQYPDGLRTPFIINALE------EPYDYDEEYIISMTDWYYTPFNILVPDEFKTW 182 Query: 397 -SCLLKSSLIDLGTEINTINAADAIA-----RMQFYYVKTKNG----LRSYHMV------ 528 + + D G +T NA A+ R++F + N + ++M Sbjct: 183 KNPTGAEPVPDTGLFNDTANATFAMEPGKTYRLRFINIGAFNNYDVMIEDHNMTIIEVDG 242 Query: 529 --NQYSSMNQSKLLVDQIFNQLKSKNTTFKTNYSLEAFRVDPLSATISGDINNPNVKYDF 702 + ++ L V Q ++ L + + NY++ A+ + L TI D NPNV Sbjct: 243 EYTEPQEVSSIHLTVAQRYSVLVTAKNSTDRNYAITAYMDESLFDTIP-DNYNPNVTAWL 301 Query: 703 AIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYSNATNILSIKFWFSKPVNA 882 + +D + + +Y+ + LN L + + SI WF Sbjct: 302 SYNSDASYDLGPDIDEIDSYDDAE----------LNPLYSWDVTESNHSINIWFDFFTLG 351 Query: 883 DRKPIIEINNSPHPF 927 D EIN+S + F Sbjct: 352 DGANYAEINDSSYVF 366
>sp|P22535|COA3_BPPRD Major capsid protein (Protein P3) Length = 395 Score = 31.6 bits (70), Expect = 5.6 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Frame = +1 Query: 217 IPTLILSAHKHNCLYYSDLFKIGKVIKAIKNYDPVNDKYKYSNMTLLEFAN--RYGAPPN 390 + I + H + +D F +++ + YDP N ++ ++ L F N + GAP Sbjct: 72 VTAAITNNHATEAVALTD-FGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAP-- 128 Query: 391 FISCLLKSSLIDLGTEINTINAADAIA 471 F+S ++ S I G +N I+A IA Sbjct: 129 FLSSMVTDSPIKYGDVMNVIDAPATIA 155
>sp|Q08352|DHA_BACSU Alanine dehydrogenase (Stage V sporulation protein N) Length = 378 Score = 31.2 bits (69), Expect = 7.4 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -1 Query: 446 VLISVPKSIKDDFNKHEMKFGGAPYLFANSKRVMLE 339 ++I VPK IK++ N+ + GG L +N RV++E Sbjct: 1 MIIGVPKEIKNNENRVALTPGGVSQLISNGHRVLVE 36
>sp|Q8SL88|RPOA_EUGST DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 213 Score = 31.2 bits (69), Expect = 7.4 Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 12/183 (6%) Frame = +1 Query: 292 IKAIKNYDPVNDKYKYSNMTLLEFAN-RYGAPPNFISCLLKSSLIDLGTEINTINAADAI 468 I IKNY Y N L +F+N A N + L L L ++I + + Sbjct: 6 ISLIKNYFIEGSSYGLFNFDLQDFSNCDRVAWGNLLRRTLLKDLEGLRFGNSSIFISRSF 65 Query: 469 ARMQFYYVKTKNGLRSYHMVNQYSSMNQSKLLVDQIFNQLK------SKNTTFKTNYSLE 630 +++ +Y H VN+YS + Q + Q+F+ + SK KT+YS+ Sbjct: 66 SKIPYY-----------HRVNEYSDIEQVNPSLLQVFSNFRNLHIFSSKPFYRKTSYSM- 113 Query: 631 AFRVDPLSATISGDINNPNVKYDFAIVADTLQ-----ETRRILSTTKAYNSGDPRIYEPL 795 +V + S DI PN Y +V +Q R L G + + P+ Sbjct: 114 -IKVLTSRSYFSKDILLPNNLY---VVNPDVQLFEFLSKRYKLRIISEICKGSGKSFSPI 169 Query: 796 KRV 804 K+V Sbjct: 170 KKV 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,785,936
Number of Sequences: 369166
Number of extensions: 3238725
Number of successful extensions: 8478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8477
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 16174954980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
