Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_N17
(938 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q88P86|HIS8_PSEPK Histidinol-phosphate aminotransferase ... 33 1.5
sp|Q97ES6|HIS8_CLOAB Histidinol-phosphate aminotransferase ... 32 2.0
sp|P76162|YDFU_ECOLI Hypothetical protein ydfU 32 2.0
sp|Q40778|C74A2_PARAR Cytochrome P450 74A2 (Allene oxide sy... 32 2.6
sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromo... 32 2.6
sp|Q9EQH1|GAB2_RAT GRB2-associated binding protein 2 (GRB2-... 31 5.8
sp|Q971A9|ILVC_SULTO Ketol-acid reductoisomerase (Acetohydr... 31 5.8
sp|Q9Z1S8|GAB2_MOUSE GRB2-associated binding protein 2 (GRB... 31 5.8
sp|Q09920|FIO1_SCHPO Iron transport multicopper oxidase fio... 30 7.5
sp|Q9UQC2|GAB2_HUMAN GRB2-associated binding protein 2 (GRB... 30 7.5
>sp|Q88P86|HIS8_PSEPK Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 348
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 259 KYDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQY 393
+YD +V TL ++R + G P + E L+R+ NS N Y
Sbjct: 198 RYDNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFNSY 242
>sp|Q97ES6|HIS8_CLOAB Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 352
Score = 32.3 bits (72), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 262 YDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYS 396
Y ++ TL ++R + + G P + E L RV NS+N Y+
Sbjct: 199 YKNLLIVQTLSKSRSLAGLRIGFAMGSPELIEGLSRVKNSINSYT 243
>sp|P76162|YDFU_ECOLI Hypothetical protein ydfU
Length = 349
Score = 32.3 bits (72), Expect = 2.0
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 583 SISKINWTKICTELIDILPELTNASILKLRYDSIDMGVLMDTKYGMNRLNVSSMINMGIK 762
S+++++W +C +++D LPE + L L + I V ++ L +S++ K
Sbjct: 162 SLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKI-CSVYRESDIVPGELTATSILKQRTK 220
Query: 763 NLVFAGDWLEAPDNFANGLEKS 828
NL AP +A+ +KS
Sbjct: 221 NL--------APLPYAHQQQKS 234
>sp|Q40778|C74A2_PARAR Cytochrome P450 74A2 (Allene oxide synthase) (Rubber particle
protein) (RPP)
Length = 473
Score = 32.0 bits (71), Expect = 2.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 785 QSPAKTRFFIPIFIILDTFNRFIPYFVSIRTPM 687
Q P F +P F+I T+N+ YF S+ TP+
Sbjct: 219 QEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPV 251
>sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromosome X
Length = 1203
Score = 32.0 bits (71), Expect = 2.6
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 253 NVKYDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYSNA 402
N++Y A V ++ Q+ R ST + GDP ++EPL LN + Y++A
Sbjct: 1053 NIRYGVATVENSSQDPTRPPSTDDSL--GDPALHEPLWANLNPHSSYTSA 1100
>sp|Q9EQH1|GAB2_RAT GRB2-associated binding protein 2 (GRB2-associated binder-2)
Length = 665
Score = 30.8 bits (68), Expect = 5.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 924 FNKKMFQDLIVFEILKEISFYNLHGSLLSNHNRFLQTICKI 802
FNKK QD VF+I + L ++ N+++Q+IC+I
Sbjct: 77 FNKKELQDSFVFDIKTSERTFYLVAETEADMNKWVQSICQI 117
>sp|Q971A9|ILVC_SULTO Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 332
Score = 30.8 bits (68), Expect = 5.8
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Frame = +1
Query: 103 YSSMNQSKLLVDQIFNQ-----LKSKNTTFKTNYSLEAFRVDPLSATISGDINNPNVKYD 267
Y ++N+ K++VD I+ + LK+ + T K T + N +VK
Sbjct: 226 YETINEMKMIVDLIYEKGFTGMLKAVSETAKYG-----------GFTAGKYVINEDVKKR 274
Query: 268 FAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQ 390
V D ++ + + YN G P + +K V NSL +
Sbjct: 275 MKEVLDRIRSGKFAEEWIEEYNKGAPTLVNGMKEVENSLEE 315
>sp|Q9Z1S8|GAB2_MOUSE GRB2-associated binding protein 2 (GRB2-associated binder-2) (PH
domain containing adaptor molecule p97)
Length = 665
Score = 30.8 bits (68), Expect = 5.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 924 FNKKMFQDLIVFEILKEISFYNLHGSLLSNHNRFLQTICKI 802
FNKK QD VF+I + L ++ N+++Q+IC+I
Sbjct: 77 FNKKELQDSFVFDIKTSERTFYLVAETEADMNKWVQSICQI 117
>sp|Q09920|FIO1_SCHPO Iron transport multicopper oxidase fio1 precursor
Length = 622
Score = 30.4 bits (67), Expect = 7.5
Identities = 30/123 (24%), Positives = 49/123 (39%)
Frame = +1
Query: 127 LLVDQIFNQLKSKNTTFKTNYSLEAFRVDPLSATISGDINNPNVKYDFAIVADTLQETRR 306
L V Q ++ L + + NY++ A+ + L TI D NPNV + +D +
Sbjct: 255 LTVAQRYSVLVTAKNSTDRNYAITAYMDESLFDTIP-DNYNPNVTAWLSYNSDASYDLGP 313
Query: 307 ILSTTKAYNSGDPRIYEPLKRVLNSLNQYSNATNILSIKFWFSKPVNADRKPIIEINNSP 486
+ +Y+ + LN L + + SI WF D EIN+S
Sbjct: 314 DIDEIDSYDDAE----------LNPLYSWDVTESNHSINIWFDFFTLGDGANYAEINDSS 363
Query: 487 HPF 495
+ F
Sbjct: 364 YVF 366
>sp|Q9UQC2|GAB2_HUMAN GRB2-associated binding protein 2 (GRB2-associated binder-2)
(pp100)
Length = 676
Score = 30.4 bits (67), Expect = 7.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 924 FNKKMFQDLIVFEILKEISFYNLHGSLLSNHNRFLQTICKI 802
FNKK QD VF+I + L + N+++Q+IC+I
Sbjct: 75 FNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSICQI 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,725,683
Number of Sequences: 369166
Number of extensions: 2166824
Number of successful extensions: 5826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5826
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9702894260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)