Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E20
(935 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q88P86|HIS8_PSEPK Histidinol-phosphate aminotransferase ... 33 1.5
sp|Q58320|Y910_METJA Hypothetical protein MJ0910 32 2.0
sp|Q97ES6|HIS8_CLOAB Histidinol-phosphate aminotransferase ... 32 2.0
sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromo... 32 2.6
sp|Q09920|FIO1_SCHPO Iron transport multicopper oxidase fio... 32 3.4
sp|P22535|COA3_BPPRD Major capsid protein (Protein P3) 32 3.4
sp|Q08352|DHA_BACSU Alanine dehydrogenase (Stage V sporulat... 31 4.4
sp|Q8SL88|RPOA_EUGST DNA-directed RNA polymerase alpha chai... 31 4.4
sp|Q971A9|ILVC_SULTO Ketol-acid reductoisomerase (Acetohydr... 31 5.7
sp|P38008|PMPF_CHLTR Probable outer membrane protein pmpF p... 30 7.5
>sp|Q88P86|HIS8_PSEPK Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 348
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 691 KYDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQY 825
+YD +V TL ++R + G P + E L+R+ NS N Y
Sbjct: 198 RYDNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFNSY 242
>sp|Q58320|Y910_METJA Hypothetical protein MJ0910
Length = 174
Score = 32.3 bits (72), Expect = 2.0
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +1
Query: 52 KGLNYRLPKHHPVIFQSSALFRDLASQFGNKFYQLHEVNLLVNKDEILSISEN 210
KG+N L P F + +++A++FG K+Y++ E ++KD+IL I ++
Sbjct: 121 KGINVILIDTEPQSFIKIGIGKEIANRFGFKYYKIEE----LSKDKILDICKS 169
>sp|Q97ES6|HIS8_CLOAB Histidinol-phosphate aminotransferase (Imidazole acetol-phosphate
transaminase)
Length = 352
Score = 32.3 bits (72), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 694 YDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYS 828
Y ++ TL ++R + + G P + E L RV NS+N Y+
Sbjct: 199 YKNLLIVQTLSKSRSLAGLRIGFAMGSPELIEGLSRVKNSINSYT 243
>sp|Q11069|YT41_CAEEL Hypothetical protein B0416.1 in chromosome X
Length = 1203
Score = 32.0 bits (71), Expect = 2.6
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 685 NVKYDFAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYSNA 834
N++Y A V ++ Q+ R ST + GDP ++EPL LN + Y++A
Sbjct: 1053 NIRYGVATVENSSQDPTRPPSTDDSL--GDPALHEPLWANLNPHSSYTSA 1100
>sp|Q09920|FIO1_SCHPO Iron transport multicopper oxidase fio1 precursor
Length = 622
Score = 31.6 bits (70), Expect = 3.4
Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 26/255 (10%)
Frame = +1
Query: 241 HKHNCLYYSDLFKIGKVIKAIKNYDPVNDKYKYSNMTLLEFANRYGAPPNFI-------- 396
H H+ Y D + +I A++ + Y Y ++ + Y P N +
Sbjct: 129 HSHDMSQYPDGLRTPFIINALE------EPYDYDEEYIISMTDWYYTPFNILVPDEFKTW 182
Query: 397 -SCLLKSSLIDLGTEINTINAADAIA-----RMQFYYVKTKNG----LRSYHMV------ 528
+ + D G +T NA A+ R++F + N + ++M
Sbjct: 183 KNPTGAEPVPDTGLFNDTANATFAMEPGKTYRLRFINIGAFNNYDVMIEDHNMTIIEVDG 242
Query: 529 --NQYSSMNQSKLLVDQIFNQLKSKNTTFKTNYSLEAFRVDPLSATISGDINNPNVKYDF 702
+ ++ L V Q ++ L + + NY++ A+ + L TI D NPNV
Sbjct: 243 EYTEPQEVSSIHLTVAQRYSVLVTAKNSTDRNYAITAYMDESLFDTIP-DNYNPNVTAWL 301
Query: 703 AIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQYSNATNILSIKFWFSKPVNA 882
+ +D + + +Y+ + LN L + + SI WF
Sbjct: 302 SYNSDASYDLGPDIDEIDSYDDAE----------LNPLYSWDVTESNHSINIWFDFFTLG 351
Query: 883 DRKPIIEINNSPHPF 927
D EIN+S + F
Sbjct: 352 DGANYAEINDSSYVF 366
>sp|P22535|COA3_BPPRD Major capsid protein (Protein P3)
Length = 395
Score = 31.6 bits (70), Expect = 3.4
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 217 IPTLILSAHKHNCLYYSDLFKIGKVIKAIKNYDPVNDKYKYSNMTLLEFAN--RYGAPPN 390
+ I + H + +D F +++ + YDP N ++ ++ L F N + GAP
Sbjct: 72 VTAAITNNHATEAVALTD-FGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAP-- 128
Query: 391 FISCLLKSSLIDLGTEINTINAADAIA 471
F+S ++ S I G +N I+A IA
Sbjct: 129 FLSSMVTDSPIKYGDVMNVIDAPATIA 155
>sp|Q08352|DHA_BACSU Alanine dehydrogenase (Stage V sporulation protein N)
Length = 378
Score = 31.2 bits (69), Expect = 4.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 446 VLISVPKSIKDDFNKHEMKFGGAPYLFANSKRVMLE 339
++I VPK IK++ N+ + GG L +N RV++E
Sbjct: 1 MIIGVPKEIKNNENRVALTPGGVSQLISNGHRVLVE 36
>sp|Q8SL88|RPOA_EUGST DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded RNA
polymerase alpha subunit) (RNA polymerase alpha subunit)
Length = 213
Score = 31.2 bits (69), Expect = 4.4
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 12/183 (6%)
Frame = +1
Query: 292 IKAIKNYDPVNDKYKYSNMTLLEFAN-RYGAPPNFISCLLKSSLIDLGTEINTINAADAI 468
I IKNY Y N L +F+N A N + L L L ++I + +
Sbjct: 6 ISLIKNYFIEGSSYGLFNFDLQDFSNCDRVAWGNLLRRTLLKDLEGLRFGNSSIFISRSF 65
Query: 469 ARMQFYYVKTKNGLRSYHMVNQYSSMNQSKLLVDQIFNQLK------SKNTTFKTNYSLE 630
+++ +Y H VN+YS + Q + Q+F+ + SK KT+YS+
Sbjct: 66 SKIPYY-----------HRVNEYSDIEQVNPSLLQVFSNFRNLHIFSSKPFYRKTSYSM- 113
Query: 631 AFRVDPLSATISGDINNPNVKYDFAIVADTLQ-----ETRRILSTTKAYNSGDPRIYEPL 795
+V + S DI PN Y +V +Q R L G + + P+
Sbjct: 114 -IKVLTSRSYFSKDILLPNNLY---VVNPDVQLFEFLSKRYKLRIISEICKGSGKSFSPI 169
Query: 796 KRV 804
K+V
Sbjct: 170 KKV 172
>sp|Q971A9|ILVC_SULTO Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
Length = 332
Score = 30.8 bits (68), Expect = 5.7
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Frame = +1
Query: 535 YSSMNQSKLLVDQIFNQ-----LKSKNTTFKTNYSLEAFRVDPLSATISGDINNPNVKYD 699
Y ++N+ K++VD I+ + LK+ + T K T + N +VK
Sbjct: 226 YETINEMKMIVDLIYEKGFTGMLKAVSETAKYG-----------GFTAGKYVINEDVKKR 274
Query: 700 FAIVADTLQETRRILSTTKAYNSGDPRIYEPLKRVLNSLNQ 822
V D ++ + + YN G P + +K V NSL +
Sbjct: 275 MKEVLDRIRSGKFAEEWIEEYNKGAPTLVNGMKEVENSLEE 315
>sp|P38008|PMPF_CHLTR Probable outer membrane protein pmpF precursor (Polymorphic
membrane protein F)
Length = 1034
Score = 30.4 bits (67), Expect = 7.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 172 LVNKDEILSISENEYIP-TLILSAHKHNCLYYSDLFKIGKVIKAIKNYDP 318
L+ K ++ I+ NE P TL L A K +Y+ DLF+ +V + N P
Sbjct: 388 LLGKRKLFHINNNEITPYTLSLGAKKDTRIYFYDLFQWERVKENTSNNPP 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,903,316
Number of Sequences: 369166
Number of extensions: 2076625
Number of successful extensions: 5207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5206
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9654860130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)