Planarian EST Database

DrC_00299

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00299 AACATGTCTGGCACAAAGCTCTTTGTTGGAAATATACCGAATGGTACCTCCAAAGATGAA TTATCCCGTTTATTTTCGAAATATGGAGAAATTTTAGAAGTTACAATTGTTAAAAATTTT GGATTTATACATATGAGTTCAGAAGAAGAAGCTAATCACGCAATTGAAGTTTTAGACGGG ACAGAATTCGCAGGTAATATAATAAATGTGGAAATAAGTCATGGAGGAAAGGACAAACGA CCCAGAGATGACAGGAGAATTCTTCCACGTAAACCTTACGGTCGTAATGATGAACGTGAT TCTCGCGATGGTTATCGAAGTAGCAGATATGAAGGTCACTACTCTAATAATGATCGTACC CGACATAGGGATGCTCCGCACAATCCTTTAGAAATGCTCAGTGGTCGACCAGATTTGCCT ATTGCAGCTTCAATGCTTGCCGCAACTCTTTTAAATCCAAACACTCTCAGTCTTTTACAA AACATGGCGAACATAAGAAATATGGGAAATCGTGAAGAAAATGGCAATCGAGAAGAACGT CGATATTCACGACGATCTCCGCCAAGAACGGATCGATATAGTTCGTCAAGGTACCAAACA CATGAAAGAAGGTATGTAATTCATTCTTGCTCTTGAGCTATGTGAATCTCAAAAATCAAA TCTAATGAATTCTCGTTCAATCAAAGTATAAGTCTATTTAAATTAAATTCGAATGTTCAC TGGAATTAAGTCTTCTATTCTGGTCAAAATCTTAGAAAATTCTGAAATAATCTCTAACCA GTCGTTTTCTGCTTATATTTTCTCATGTCTAAAAAATAATTAACGAGAAATTATAACGAA ATACGGACACTAATTTTATTCTCGATAATTAAATTCGATATTTTAATAATTTGTAAAGTT GGATCACGCTTATTTCTCAAATTTTACACAATCTTCACGTTTCGATCGACAATTCATTCT AGAATGAAATATATCTTTATTCCATGATCATTATGTCTACTAGTCTAAATATTTCTACAT TATTTCAGACATCGTTCAAGAAGTGATAGGTCACCAGATCGCAGTTATTCAAGGCGCCAT TAGTCTCCTGTATTTGTAAATATTCTGTATTGTCTAAGATCGTGGAACATCAGCTTTTAT TATTCATCAGTGG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00299
         (1153 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6IQ97|RBM4_BRARE  RNA-binding protein 4 (RNA-binding mot...    71   5e-12
sp|Q8C2Q3|RBM14_MOUSE  RNA-binding protein 14 (RNA-binding m...    64   8e-10
sp|Q5RC41|RBM14_PONPY  RNA-binding protein 14 (RNA-binding m...    64   8e-10
sp|Q96PK6|RBM14_HUMAN  RNA-binding protein 14 (RNA-binding m...    64   8e-10
sp|Q5EA36|RBM14_BOVIN  RNA-binding protein 14 (RNA-binding m...    64   8e-10
sp|Q8VE92|RBM30_MOUSE  RNA-binding protein 30 (RNA-binding m...    64   1e-09
sp|Q9BQ04|RBM30_HUMAN  RNA-binding protein 30 (RNA-binding m...    64   1e-09
sp|Q64LC9|RBM30_RAT  RNA-binding protein 30 (RNA-binding mot...    64   1e-09
sp|Q8C7Q4|RBM4_MOUSE  RNA-binding protein 4 (RNA-binding mot...    64   1e-09
sp|Q9BDY9|RBM4_RABIT  RNA-binding protein 4 (RNA-binding mot...    64   1e-09

>sp|Q6IQ97|RBM4_BRARE RNA-binding protein 4 (RNA-binding motif protein 4)
          Length = 419

 Score = 71.2 bits (173), Expect = 5e-12
 Identities = 35/70 (50%), Positives = 48/70 (68%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           K+FVGN+   T+ +E+  LFS+YG+I E  IVKNFGF+HM S+ EA+ AI+ L      G
Sbjct: 3   KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62

Query: 196 NIINVEISHG 225
             +NVE+S G
Sbjct: 63  MAMNVEMSKG 72


 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 30/71 (42%), Positives = 45/71 (63%)
 Frame = +1

Query: 7   SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
           + TKL VGNI +  +  EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD T 
Sbjct: 76  TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTA 135

Query: 187 FAGNIINVEIS 219
           F G +++V++S
Sbjct: 136 FQGKLMSVKLS 146

>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding motif protein 14)
          Length = 669

 Score = 63.9 bits (154), Expect = 8e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           K+FVGN+    +  EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139

Query: 196 NIINVEISHGG 228
             INVE+S  G
Sbjct: 140 KRINVELSTKG 150


 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +1

Query: 16  KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
           K+FVGN+    T+ +EL+ LF+ YG ++   ++K F F+HM     A  AIE L G E  
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query: 190 AGNIINVEIS 219
            G  + VE+S
Sbjct: 62  PGRALVVEMS 71

>sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding motif protein 14)
          Length = 669

 Score = 63.9 bits (154), Expect = 8e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           K+FVGN+    +  EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139

Query: 196 NIINVEISHGG 228
             INVE+S  G
Sbjct: 140 KRINVELSTKG 150


 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +1

Query: 16  KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
           K+FVGN+    T+ +EL+ LF+ YG ++   ++K F F+HM     A  AIE L G E  
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query: 190 AGNIINVEIS 219
            G  + VE+S
Sbjct: 62  PGRALVVEMS 71

>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding motif protein 14)
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 63.9 bits (154), Expect = 8e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           K+FVGN+    +  EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139

Query: 196 NIINVEISHGG 228
             INVE+S  G
Sbjct: 140 KRINVELSTKG 150


 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +1

Query: 16  KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
           K+FVGN+    T+ +EL+ LF+ YG ++   ++K F F+HM     A  AIE L G E  
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query: 190 AGNIINVEIS 219
            G  + VE+S
Sbjct: 62  PGRALVVEMS 71

>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding motif protein 14)
          Length = 669

 Score = 63.9 bits (154), Expect = 8e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           K+FVGN+    +  EL  LF + G ++E  +VK++ F+HM  E +A  AI  L+G E  G
Sbjct: 80  KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139

Query: 196 NIINVEISHGG 228
             INVE+S  G
Sbjct: 140 KRINVELSTKG 150


 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +1

Query: 16  KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
           K+FVGN+    T+ +EL+ LF+ YG ++   ++K F F+HM     A  AIE L G E  
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61

Query: 190 AGNIINVEIS 219
            G  + VE+S
Sbjct: 62  PGRALVVEMS 71

>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30)
          Length = 357

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +1

Query: 7   SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
           + TKL VGNI    +  EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TE
Sbjct: 76  ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135

Query: 187 FAGNIINVEIS 219
           F G  ++V++S
Sbjct: 136 FQGKRMHVQLS 146


 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           KLF+GN+P   ++ E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G
Sbjct: 3   KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query: 196 NIINVEIS 219
             INVE S
Sbjct: 63  VNINVEAS 70

>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding
           motif protein 4b)
          Length = 359

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +1

Query: 7   SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
           + TKL VGNI    +  EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TE
Sbjct: 76  ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135

Query: 187 FAGNIINVEIS 219
           F G  ++V++S
Sbjct: 136 FQGKRMHVQLS 146


 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           KLF+GN+P   ++ E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G
Sbjct: 3   KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query: 196 NIINVEIS 219
             INVE S
Sbjct: 63  VNINVEAS 70

>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +1

Query: 7   SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
           + TKL VGNI    +  EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TE
Sbjct: 76  ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135

Query: 187 FAGNIINVEIS 219
           F G  ++V++S
Sbjct: 136 FQGKRMHVQLS 146


 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           KLF+GN+P   ++ E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G
Sbjct: 3   KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query: 196 NIINVEIS 219
             INVE S
Sbjct: 63  VNINVEAS 70

>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
           (Mlark)
          Length = 361

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +1

Query: 7   SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
           + TKL VGNI    +  EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TE
Sbjct: 76  ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135

Query: 187 FAGNIINVEIS 219
           F G  ++V++S
Sbjct: 136 FQGKRMHVQLS 146


 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           KLF+GN+P   ++ E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G
Sbjct: 3   KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query: 196 NIINVEIS 219
             INVE S
Sbjct: 63  VNINVEAS 70

>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
          Length = 359

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +1

Query: 7   SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
           + TKL VGNI    +  EL   F +YG ++E  IVK++ F+HM   E+A  AI  LD TE
Sbjct: 76  ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135

Query: 187 FAGNIINVEIS 219
           F G  ++V++S
Sbjct: 136 FQGKRMHVQLS 146


 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +1

Query: 16  KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
           KLF+GN+P   ++ E+  LF +YG++LE  I+KN+GF+H+  +  A  AI  L   +  G
Sbjct: 3   KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62

Query: 196 NIINVEIS 219
             INVE S
Sbjct: 63  VNINVEAS 70

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,645,381
Number of Sequences: 369166
Number of extensions: 2113069
Number of successful extensions: 5489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5429
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12917122860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00299

Planaria EST Database

DrC_00299

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail