Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_C24
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6IQ97|RBM4_BRARE RNA-binding protein 4 (RNA-binding mot... 71 3e-12
sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding m... 64 5e-10
sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding m... 64 5e-10
sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding m... 64 5e-10
sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding m... 64 5e-10
sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding m... 64 7e-10
sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding m... 64 7e-10
sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding mot... 64 7e-10
sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding mot... 64 7e-10
sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding mot... 64 7e-10
>sp|Q6IQ97|RBM4_BRARE RNA-binding protein 4 (RNA-binding motif protein 4)
Length = 419
Score = 71.2 bits (173), Expect = 3e-12
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
K+FVGN+ T+ +E+ LFS+YG+I E IVKNFGF+HM S+ EA+ AI+ L G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 196 NIINVEISHG 225
+NVE+S G
Sbjct: 63 MAMNVEMSKG 72
Score = 64.3 bits (155), Expect = 4e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +1
Query: 7 SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
+ TKL VGNI + + EL F +YG ++E IVK++ F+HM E+A AI LD T
Sbjct: 76 TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTA 135
Query: 187 FAGNIINVEIS 219
F G +++V++S
Sbjct: 136 FQGKLMSVKLS 146
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 63.9 bits (154), Expect = 5e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
K+FVGN+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 196 NIINVEISHGG 228
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 52.8 bits (125), Expect = 1e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 16 KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
K+FVGN+ T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 190 AGNIINVEIS 219
G + VE+S
Sbjct: 62 PGRALVVEMS 71
>sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 63.9 bits (154), Expect = 5e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
K+FVGN+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 196 NIINVEISHGG 228
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 52.8 bits (125), Expect = 1e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 16 KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
K+FVGN+ T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 190 AGNIINVEIS 219
G + VE+S
Sbjct: 62 PGRALVVEMS 71
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding motif protein 14)
(RRM-containing coactivator activator/modulator)
(Synaptotagmin-interacting protein) (SYT-interacting
protein)
Length = 669
Score = 63.9 bits (154), Expect = 5e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
K+FVGN+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 196 NIINVEISHGG 228
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 52.8 bits (125), Expect = 1e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 16 KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
K+FVGN+ T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 190 AGNIINVEIS 219
G + VE+S
Sbjct: 62 PGRALVVEMS 71
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 63.9 bits (154), Expect = 5e-10
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
K+FVGN+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 196 NIINVEISHGG 228
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 52.8 bits (125), Expect = 1e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 16 KLFVGNIPNG-TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF- 189
K+FVGN+ T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61
Query: 190 AGNIINVEIS 219
G + VE+S
Sbjct: 62 PGRALVVEMS 71
>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30)
Length = 357
Score = 63.5 bits (153), Expect = 7e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 7 SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
+ TKL VGNI + EL F +YG ++E IVK++ F+HM E+A AI LD TE
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Query: 187 FAGNIINVEIS 219
F G ++V++S
Sbjct: 136 FQGKRMHVQLS 146
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
KLF+GN+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 196 NIINVEIS 219
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding
motif protein 4b)
Length = 359
Score = 63.5 bits (153), Expect = 7e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 7 SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
+ TKL VGNI + EL F +YG ++E IVK++ F+HM E+A AI LD TE
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Query: 187 FAGNIINVEIS 219
F G ++V++S
Sbjct: 136 FQGKRMHVQLS 146
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
KLF+GN+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 196 NIINVEIS 219
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30)
(Zinc-responsive protein ZD7)
Length = 357
Score = 63.5 bits (153), Expect = 7e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 7 SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
+ TKL VGNI + EL F +YG ++E IVK++ F+HM E+A AI LD TE
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Query: 187 FAGNIINVEIS 219
F G ++V++S
Sbjct: 136 FQGKRMHVQLS 146
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
KLF+GN+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 196 NIINVEIS 219
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
(Mlark)
Length = 361
Score = 63.5 bits (153), Expect = 7e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 7 SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
+ TKL VGNI + EL F +YG ++E IVK++ F+HM E+A AI LD TE
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Query: 187 FAGNIINVEIS 219
F G ++V++S
Sbjct: 136 FQGKRMHVQLS 146
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
KLF+GN+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 196 NIINVEIS 219
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
Length = 359
Score = 63.5 bits (153), Expect = 7e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 7 SGTKLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTE 186
+ TKL VGNI + EL F +YG ++E IVK++ F+HM E+A AI LD TE
Sbjct: 76 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTE 135
Query: 187 FAGNIINVEIS 219
F G ++V++S
Sbjct: 136 FQGKRMHVQLS 146
Score = 62.8 bits (151), Expect = 1e-09
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +1
Query: 16 KLFVGNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 195
KLF+GN+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 196 NIINVEIS 219
INVE S
Sbjct: 63 VNINVEAS 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,496,438
Number of Sequences: 369166
Number of extensions: 1606887
Number of successful extensions: 5104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5044
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)