Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B21
(503 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6IQ97|RBM4_BRARE RNA-binding protein 4 (RNA-binding mot... 63 5e-10
sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding m... 55 7e-08
sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding m... 55 7e-08
sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding m... 55 7e-08
sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding m... 55 7e-08
sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding m... 54 2e-07
sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding m... 54 2e-07
sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding mot... 54 2e-07
sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding mot... 54 2e-07
sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding mot... 54 2e-07
>sp|Q6IQ97|RBM4_BRARE RNA-binding protein 4 (RNA-binding motif protein 4)
Length = 419
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+ T+ +E+ LFS+YG+I E IVKNFGF+HM S+ EA+ AI+ L G
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62
Query: 195 NIINVEISHG 224
+NVE+S G
Sbjct: 63 MAMNVEMSKG 72
Score = 55.1 bits (131), Expect = 9e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 30 NIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAGNIINV 209
NI + + EL F +YG ++E IVK++ F+HM E+A AI LD T F G +++V
Sbjct: 84 NISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAFQGKLMSV 143
Query: 210 EIS 218
++S
Sbjct: 144 KLS 146
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 55.5 bits (132), Expect = 7e-08
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 195 NIINVEISHGG 227
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 45.4 bits (106), Expect = 7e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF-AGNIINVEIS 218
T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E G + VE+S
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMS 71
>sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 55.5 bits (132), Expect = 7e-08
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 195 NIINVEISHGG 227
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 45.4 bits (106), Expect = 7e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF-AGNIINVEIS 218
T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E G + VE+S
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMS 71
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding motif protein 14)
(RRM-containing coactivator activator/modulator)
(Synaptotagmin-interacting protein) (SYT-interacting
protein)
Length = 669
Score = 55.5 bits (132), Expect = 7e-08
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 195 NIINVEISHGG 227
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 45.4 bits (106), Expect = 7e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF-AGNIINVEIS 218
T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E G + VE+S
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELRPGRALVVEMS 71
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 55.5 bits (132), Expect = 7e-08
Identities = 27/71 (38%), Positives = 39/71 (54%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+ + EL LF + G ++E +VK++ F+HM E +A AI L+G E G
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139
Query: 195 NIINVEISHGG 227
INVE+S G
Sbjct: 140 KRINVELSTKG 150
Score = 45.4 bits (106), Expect = 7e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 45 TSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEF-AGNIINVEIS 218
T+ +EL+ LF+ YG ++ ++K F F+HM A AIE L G E G + VE+S
Sbjct: 13 TTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELRPGRALVVEMS 71
>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30)
Length = 357
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 30 NIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAGNIINV 209
NI + EL F +YG ++E IVK++ F+HM E+A AI LD TEF G ++V
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 210 EIS 218
++S
Sbjct: 144 QLS 146
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 195 NIINVEIS 218
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding
motif protein 4b)
Length = 359
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 30 NIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAGNIINV 209
NI + EL F +YG ++E IVK++ F+HM E+A AI LD TEF G ++V
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 210 EIS 218
++S
Sbjct: 144 QLS 146
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 195 NIINVEIS 218
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30)
(Zinc-responsive protein ZD7)
Length = 357
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 30 NIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAGNIINV 209
NI + EL F +YG ++E IVK++ F+HM E+A AI LD TEF G ++V
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 210 EIS 218
++S
Sbjct: 144 QLS 146
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 195 NIINVEIS 218
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
(Mlark)
Length = 361
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 30 NIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAGNIINV 209
NI + EL F +YG ++E IVK++ F+HM E+A AI LD TEF G ++V
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 210 EIS 218
++S
Sbjct: 144 QLS 146
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 195 NIINVEIS 218
INVE S
Sbjct: 63 VNINVEAS 70
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
Length = 359
Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +3
Query: 30 NIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAGNIINV 209
NI + EL F +YG ++E IVK++ F+HM E+A AI LD TEF G ++V
Sbjct: 84 NISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
Query: 210 EIS 218
++S
Sbjct: 144 QLS 146
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +3
Query: 15 KALCWNIPNGTSKDELSRLFSKYGEILEVTIVKNFGFIHMSSEEEANHAIEVLDGTEFAG 194
K N+P ++ E+ LF +YG++LE I+KN+GF+H+ + A AI L + G
Sbjct: 3 KLFIGNLpreATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62
Query: 195 NIINVEIS 218
INVE S
Sbjct: 63 VNINVEAS 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,970,184
Number of Sequences: 369166
Number of extensions: 903661
Number of successful extensions: 3231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3196
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)