Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_K06
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding m... 35 0.26
sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding m... 35 0.26
sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding m... 35 0.26
sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding m... 35 0.26
sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding m... 33 0.58
sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding m... 33 0.58
sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 (RNA-binding mot... 33 0.58
sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding mot... 33 0.58
sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding mot... 33 0.58
sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding mot... 33 0.58
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 34.7 bits (78), Expect = 0.26
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEISHGG 106
F+HM E +A AI L+G E G INVE+S G
Sbjct: 116 FVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>sp|Q5RC41|RBM14_PONPY RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 34.7 bits (78), Expect = 0.26
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEISHGG 106
F+HM E +A AI L+G E G INVE+S G
Sbjct: 116 FVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 (RNA-binding motif protein 14)
(RRM-containing coactivator activator/modulator)
(Synaptotagmin-interacting protein) (SYT-interacting
protein)
Length = 669
Score = 34.7 bits (78), Expect = 0.26
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEISHGG 106
F+HM E +A AI L+G E G INVE+S G
Sbjct: 116 FVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 34.7 bits (78), Expect = 0.26
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEISHGG 106
F+HM E +A AI L+G E G INVE+S G
Sbjct: 116 FVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>sp|Q8VE92|RBM30_MOUSE RNA-binding protein 30 (RNA-binding motif protein 30)
Length = 357
Score = 33.5 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEIS 97
F+HM E+A AI LD TEF G ++V++S
Sbjct: 115 FVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>sp|Q9BQ04|RBM30_HUMAN RNA-binding protein 30 (RNA-binding motif protein 30) (RNA-binding
motif protein 4b)
Length = 359
Score = 33.5 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEIS 97
F+HM E+A AI LD TEF G ++V++S
Sbjct: 115 FVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
(Hlark) (RNA-binding motif protein 4a)
Length = 364
Score = 33.5 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEIS 97
F+HM E+A AI LD TEF G ++V++S
Sbjct: 115 FVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>sp|Q64LC9|RBM30_RAT RNA-binding protein 30 (RNA-binding motif protein 30)
(Zinc-responsive protein ZD7)
Length = 357
Score = 33.5 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEIS 97
F+HM E+A AI LD TEF G ++V++S
Sbjct: 115 FVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
(Mlark)
Length = 361
Score = 33.5 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEIS 97
F+HM E+A AI LD TEF G ++V++S
Sbjct: 115 FVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog)
Length = 359
Score = 33.5 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 2 FIHMSSEEEANHAIEVLDGTEFAGNIINVEIS 97
F+HM E+A AI LD TEF G ++V++S
Sbjct: 115 FVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,509,074
Number of Sequences: 369166
Number of extensions: 1250022
Number of successful extensions: 3374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3372
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)