Planaria EST Database

DrC_00296

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00296
         (752 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57633|MUTL_BUCAI  DNA mismatch repair protein mutL             34   0.48 
sp|P40657|SOX15_DROME  Putative transcription factor SOX-15 ...    31   4.1  
sp|P40618|HMG4_CHICK  High mobility group protein 4 (HMG-4) ...    30   5.3  
sp|Q9BG90|SRY_MACMU  Sex-determining region Y protein (Testi...    30   9.1  
sp|P33512|NU4LM_ANOQU  NADH-ubiquinone oxidoreductase chain ...    30   9.1  
sp|P34849|NU2M_APILI  NADH-ubiquinone oxidoreductase chain 2...    30   9.1  

>sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL
          Length = 584

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
 Frame = -3

Query: 555 KENKVTFYISNVFYNMTSVSI*DNCFLAKYSLLFYKQNRWNFYGMH*TFEEKLLT*NVLV 376
           KEN + +++SN+  N+TS          +Y +LF K+   + +G H  F++K +  + + 
Sbjct: 447 KENIIEYFLSNIKINLTS---------QEYLILFNKKEILSKFGFHLIFKKKYVILSSIP 497

Query: 375 DSLMH*TFYELLN*TF-YELLN*SVFESN*MLLSFVALQIFFALLN-TYELFYLIYVLIF 202
             L    F+ +++  F +  L   VF S+  ++ +  + +F  L N TY     + + I 
Sbjct: 498 AFLKKCNFHIIISNFFAFLFLKKQVFISD--IVDWFYINVFIELKNWTYIRGIEVLLEIE 555

Query: 201 YVC 193
           Y C
Sbjct: 556 YYC 558

>sp|P40657|SOX15_DROME Putative transcription factor SOX-15 (Sox50E)
          Length = 784

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 507 SCCKKRLKYKMSPYSLWVKKNMKQLKGKGDA---SQIMRALAKSWKCLSPIDKAKFYQKA 677
           S  + R++  M+ + +W K   K+L  +      + + + L K W+ L+P D+  + ++A
Sbjct: 209 SAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEA 268

>sp|P40618|HMG4_CHICK High mobility group protein 4 (HMG-4) (High mobility group protein
           2a) (HMG-2a)
          Length = 202

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +3

Query: 519 KRLKYKMSPYSLWVKKNMKQLKGKG-----DASQIMRALAKSWKCLSPIDKAKFYQKAAS 683
           K+ K KMS Y+ +V+   ++ K K      + ++  +  ++ WK +S  +KAKF + A +
Sbjct: 7   KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKA 66

Query: 684 PK 689
            K
Sbjct: 67  DK 68

>sp|Q9BG90|SRY_MACMU Sex-determining region Y protein (Testis-determining factor)
          Length = 204

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 522 RLKYKMSPYSLWV---KKNMKQLKGKGDASQIMRALAKSWKCLSPIDKAKFYQKA 677
           ++K  M+ + +W    K+ M     K   S+I + L   WK L+  DK  F+Q+A
Sbjct: 59  KVKRPMNAFIVWSRDQKRKMALENPKMRNSEISKQLGYQWKMLTEADKWPFFQEA 113

>sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
           4L)
          Length = 99

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 288 MLLSFVALQIFFALLNTYELFYLIYVLIFYVCDF*IGFSI 169
           M+LS      F+     YE+++ ++ L F VC+  +G SI
Sbjct: 39  MVLSLFIFLFFYLNFMNYEMYFSMFFLTFCVCEGVLGLSI 78

>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 333

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 35/181 (19%), Positives = 73/181 (40%), Gaps = 4/181 (2%)
 Frame = -3

Query: 570 YFFSPKENKVTFYISNVFYNMTSVSI*DNCFLAKYSLLFYKQNRWNFYGMH*TFEEKLLT 391
           YF       ++FY +N FY +  +      F + Y +   + N+  F  M          
Sbjct: 149 YFLITNSLYISFY-ANKFYTLKKLLACSTIFNSFYFIFILELNKNMFIAM---------- 197

Query: 390 *NVLVDSLMH*TFYELLN*TFYELLN*SVFESN*MLLSFVALQIFFALLNTYELFYLIYV 211
             +++ S  +      LN    +  N  +F +   + +F+ L   +++   +  F + + 
Sbjct: 198 --IILYSFNYFLLISFLNKFNIQNFN-FMFYNKYQMYTFLTLMFNYSMYPIFLSFVIKWN 254

Query: 210 LIFYVCD---F*IGFSIYALNAFLPLWN-AVFYRHYYLFR*KYFRNFLWHLDQKLMEHSH 43
           LIF +     +     +  +++ L +WN  +  +  +L    Y  NF+   D K M HS+
Sbjct: 255 LIFMMVSVKAYNWILFLLMISSMLMIWNYIIILKRVFLKMNFYKNNFIDDKDNKYMYHSY 314

Query: 42  Y 40
           +
Sbjct: 315 F 315

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,583,716
Number of Sequences: 369166
Number of extensions: 936275
Number of successful extensions: 2275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2273
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00296

  1. Dr_sW_008_B11
  2. Dr_sW_013_H09
  3. Dr_sW_015_A14
  4. Dr_sW_023_D03
  5. Dr_sW_028_C19
  6. Dr_sW_006_G15