Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D03
(634 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL 34 0.36
sp|P40657|SOX15_DROME Putative transcription factor SOX-15 ... 31 3.0
sp|P40618|HMG4_CHICK High mobility group protein 4 (HMG-4) ... 30 3.9
sp|Q9BG90|SRY_MACMU Sex-determining region Y protein (Testi... 30 6.7
sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain ... 30 6.7
sp|O54879|HMG4_MOUSE High mobility group protein 4 (HMG-4) ... 29 8.8
sp|P36194|HMG1_CHICK High mobility group protein 1 (HMG-1) ... 29 8.8
>sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL
Length = 584
Score = 33.9 bits (76), Expect = 0.36
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Frame = -3
Query: 437 KENKVTFYISNVFYNMTSVSI*DNCFLAKYSLLFYKQNRWNFYGMH*TFEEKLLT*NVLV 258
KEN + +++SN+ N+TS +Y +LF K+ + +G H F++K + + +
Sbjct: 447 KENIIEYFLSNIKINLTS---------QEYLILFNKKEILSKFGFHLIFKKKYVILSSIP 497
Query: 257 DSLMH*TFYELLN*TF-YELLN*SVFESN*MLLSFVALQIFFALLN-TYELFYLIYVLIF 84
L F+ +++ F + L VF S+ ++ + + +F L N TY + + I
Sbjct: 498 AFLKKCNFHIIISNFFAFLFLKKQVFISD--IVDWFYINVFIELKNWTYIRGIEVLLEIE 555
Query: 83 YVC 75
Y C
Sbjct: 556 YYC 558
>sp|P40657|SOX15_DROME Putative transcription factor SOX-15 (Sox50E)
Length = 784
Score = 30.8 bits (68), Expect = 3.0
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 389 SCCKKRLKYKMSPYSLWVKKNMKQLKGKGDA---SQIMRALAKSWKCLSPIDKAKFYQKA 559
S + R++ M+ + +W K K+L + + + + L K W+ L+P D+ + ++A
Sbjct: 209 SAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEA 268
>sp|P40618|HMG4_CHICK High mobility group protein 4 (HMG-4) (High mobility group protein
2a) (HMG-2a)
Length = 202
Score = 30.4 bits (67), Expect = 3.9
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 401 KRLKYKMSPYSLWVKKNMKQLKGKG-----DASQIMRALAKSWKCLSPIDKAKFYQKAAS 565
K+ K KMS Y+ +V+ ++ K K + ++ + ++ WK +S +KAKF + A +
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKA 66
Query: 566 PK 571
K
Sbjct: 67 DK 68
>sp|Q9BG90|SRY_MACMU Sex-determining region Y protein (Testis-determining factor)
Length = 204
Score = 29.6 bits (65), Expect = 6.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 404 RLKYKMSPYSLWV---KKNMKQLKGKGDASQIMRALAKSWKCLSPIDKAKFYQKA 559
++K M+ + +W K+ M K S+I + L WK L+ DK F+Q+A
Sbjct: 59 KVKRPMNAFIVWSRDQKRKMALENPKMRNSEISKQLGYQWKMLTEADKWPFFQEA 113
>sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
4L)
Length = 99
Score = 29.6 bits (65), Expect = 6.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 170 MLLSFVALQIFFALLNTYELFYLIYVLIFYVCDF*IGFSI 51
M+LS F+ YE+++ ++ L F VC+ +G SI
Sbjct: 39 MVLSLFIFLFFYLNFMNYEMYFSMFFLTFCVCEGVLGLSI 78
>sp|O54879|HMG4_MOUSE High mobility group protein 4 (HMG-4) (High mobility group protein
2a) (HMG-2a)
Length = 200
Score = 29.3 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 401 KRLKYKMSPYSLWVKKNMKQLKGKG-----DASQIMRALAKSWKCLSPIDKAKFYQKAAS 565
K+ K KMS Y+ +V+ ++ K K + ++ + ++ WK +S +K+KF + A +
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKA 66
Query: 566 PK 571
K
Sbjct: 67 DK 68
>sp|P36194|HMG1_CHICK High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 201
Score = 29.3 bits (64), Expect = 8.8
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 401 KRLKYKMSPYSLWVKKNMKQLKGKGDA----SQIMRALAKSWKCLSPIDKAKFYQKAASP 568
K+ K KMS Y+ +V+ ++ K + ++ + ++ WK +S +KAKF + A +
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKAD 66
Query: 569 K 571
K
Sbjct: 67 K 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,137,221
Number of Sequences: 369166
Number of extensions: 689966
Number of successful extensions: 1717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)