Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_A14
(480 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40657|SOX15_DROME Putative transcription factor SOX-15 ... 31 1.7
sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL 31 1.7
sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial ... 30 3.7
sp|Q9BG90|SRY_MACMU Sex-determining region Y protein (Testi... 30 3.7
sp|P40618|HMG4_CHICK High mobility group protein 4 (HMG-4) ... 29 4.9
sp|P51501|SRY_CALJA Sex-determining region Y protein (Testi... 29 6.4
sp|Q28783|SRY_PONPY Sex-determining region Y protein (Testi... 29 6.4
sp|Q8WI26|RPOC2_PSINU DNA-directed RNA polymerase beta'' ch... 29 6.4
sp|Q09390|HG12_CAEEL High mobility group protein 1.2 28 8.3
sp|P36394|SRY_RAT Sex-determining region Y protein (Testis-... 28 8.3
>sp|P40657|SOX15_DROME Putative transcription factor SOX-15 (Sox50E)
Length = 784
Score = 30.8 bits (68), Expect = 1.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 235 SCCKKRLKYKMSPYSLWVKKNMKQLKGKGDA---SQIMRALAKSWKCLSPIDKAKFYQKA 405
S + R++ M+ + +W K K+L + + + + L K W+ L+P D+ + ++A
Sbjct: 209 SAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTPQDRRPYVEEA 268
>sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL
Length = 584
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -3
Query: 283 KENKVTFYISNVFYNMTSVSI*DNCFLAKYSLLFYKQNRWNFYGMH*TFEEK 128
KEN + +++SN+ N+TS +Y +LF K+ + +G H F++K
Sbjct: 447 KENIIEYFLSNIKINLTS---------QEYLILFNKKEILSKFGFHLIFKKK 489
>sp|P40630|TFAM_MOUSE Transcription factor A, mitochondrial precursor (mtTFA)
(Testis-specific high mobility group protein) (TS-HMG)
Length = 243
Score = 29.6 bits (65), Expect = 3.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Frame = +1
Query: 202 RESSYPKLKQMSCCKKRL-------KYKMSPYSLWVKKNMKQLKGKGDASQIMRALAKSW 360
+E+ +LK+ + K+R K S Y+++V ++ ++ K A ++ + ++W
Sbjct: 130 KEARQRRLKKKALVKRRELILLGKPKRPRSAYNIYVSESFQEAKDDS-AQGKLKLVNEAW 188
Query: 361 KCLSPIDKAKFYQKAASPR 417
K LSP +K + Q A R
Sbjct: 189 KNLSPEEKQAYIQLAKDDR 207
>sp|Q9BG90|SRY_MACMU Sex-determining region Y protein (Testis-determining factor)
Length = 204
Score = 29.6 bits (65), Expect = 3.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 250 RLKYKMSPYSLWV---KKNMKQLKGKGDASQIMRALAKSWKCLSPIDKAKFYQKA 405
++K M+ + +W K+ M K S+I + L WK L+ DK F+Q+A
Sbjct: 59 KVKRPMNAFIVWSRDQKRKMALENPKMRNSEISKQLGYQWKMLTEADKWPFFQEA 113
>sp|P40618|HMG4_CHICK High mobility group protein 4 (HMG-4) (High mobility group protein
2a) (HMG-2a)
Length = 202
Score = 29.3 bits (64), Expect = 4.9
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 247 KRLKYKMSPYSLWVKKNMKQLKGKG-----DASQIMRALAKSWKCLSPIDKAKFYQKAAS 411
K+ K KMS Y+ +V+ ++ K K + ++ + ++ WK +S +KAKF + A +
Sbjct: 7 KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKA 66
Query: 412 PR 417
+
Sbjct: 67 DK 68
>sp|P51501|SRY_CALJA Sex-determining region Y protein (Testis-determining factor)
Length = 227
Score = 28.9 bits (63), Expect = 6.4
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 244 KKRLKYKMSPYSLWVKKNMKQLKGKGDA---SQIMRALAKSWKCLSPIDKAKFYQKA 405
+ R+K M+ + +W + +++ + S+I + L WK L+ +K F+Q+A
Sbjct: 57 QNRVKRPMNAFIVWSRDQRRKMAVENPQMRNSEISKRLGYQWKLLTEAEKWPFFQEA 113
>sp|Q28783|SRY_PONPY Sex-determining region Y protein (Testis-determining factor)
Length = 233
Score = 28.9 bits (63), Expect = 6.4
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 250 RLKYKMSPYSLWVKKNMKQL---KGKGDASQIMRALAKSWKCLSPIDKAKFYQKA 405
R+K M+ + +W + +++ K S+I + L WK L+ +K F+Q+A
Sbjct: 59 RVKRPMNAFIVWSRDQRRKMALENPKMRNSEISKQLGYQWKMLTEAEKWPFFQEA 113
>sp|Q8WI26|RPOC2_PSINU DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1408
Score = 28.9 bits (63), Expect = 6.4
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +1
Query: 202 RESSYPKLKQMSCCKKRLKYKMSPYSLWVKKNMKQLKGKGDASQIMRALAKSWKCLSPID 381
R+ SYP + + + L+ K Y L+ Q+K + L W+ SPI
Sbjct: 779 RKGSYPPILNLLKEQNTLRVKFLDYMLYEDGEEIQIKNNMSIQLVQTCLLLDWEKKSPIK 838
Query: 382 KAK 390
AK
Sbjct: 839 AAK 841
>sp|Q09390|HG12_CAEEL High mobility group protein 1.2
Length = 235
Score = 28.5 bits (62), Expect = 8.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 244 KKRLKYKMSPYSLWVKKNMKQLKGKG-----DASQIMRALAKSWKCLSPIDKAKFYQKA 405
K ++ K SPY +VK ++ K K ++I + ++ WK + +K +FY+ A
Sbjct: 42 KPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELA 100
>sp|P36394|SRY_RAT Sex-determining region Y protein (Testis-determining factor)
Length = 121
Score = 28.5 bits (62), Expect = 8.3
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 250 RLKYKMSPYSLWVKKNMKQLKGKGDA---SQIMRALAKSWKCLSPIDKAKFYQKA 405
++K M+ + +W + +L + + S+I + L WK L+ +K F+Q+A
Sbjct: 4 QVKRPMNAFMVWSRGERHKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQEA 58
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,604,281
Number of Sequences: 369166
Number of extensions: 541605
Number of successful extensions: 1308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)