Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_G15
(731 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL 31 3.9
sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain ... 30 8.6
>sp|P57633|MUTL_BUCAI DNA mismatch repair protein mutL
Length = 584
Score = 30.8 bits (68), Expect = 3.9
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Frame = -1
Query: 533 KENKVTFYISNVFYNMTSVSI*DNCFLAKYSLLFYKQNRWNFYEMH*TFEEKLLT*NVLV 354
KEN + +++SN+ N+TS +Y +LF K+ + + H F++K + + +
Sbjct: 447 KENIIEYFLSNIKINLTS---------QEYLILFNKKEILSKFGFHLIFKKKYVILSSIP 497
Query: 353 DSLMH*TFYELLN*TF-YELLN*SVFESN*MLLSFVALQIFFALLN-TYELFYLIYVLIF 180
L F+ +++ F + L VF S+ ++ + + +F L N TY + + I
Sbjct: 498 AFLKKCNFHIIISNFFAFLFLKKQVFISD--IVDWFYINVFIELKNWTYIRGIEVLLEIE 555
Query: 179 YVC 171
Y C
Sbjct: 556 YYC 558
>sp|P33512|NU4LM_ANOQU NADH-ubiquinone oxidoreductase chain 4L (NADH dehydrogenase subunit
4L)
Length = 99
Score = 29.6 bits (65), Expect = 8.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 266 MLLSFVALQIFFALLNTYELFYLIYVLIFYVCDF*IGFSI 147
M+LS F+ YE+++ ++ L F VC+ +G SI
Sbjct: 39 MVLSLFIFLFFYLNFMNYEMYFSMFFLTFCVCEGVLGLSI 78
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,858,896
Number of Sequences: 369166
Number of extensions: 864070
Number of successful extensions: 2024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)