DrC_00240
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00240 (885 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q12400|TRM10_YEAST tRNA (guanine-N(1)-)-methyltransferas... 68 3e-11 sp|Q09287|YQK3_CAEEL Hypothetical protein C56G2.3 in chromo... 55 2e-07 sp|Q75A17|TRM10_ASHGO tRNA (guanine-N(1)-)-methyltransferas... 51 5e-06 sp|Q8WXR4|MYO3B_HUMAN Myosin IIIB 32 1.8 sp|O94813|SLIT2_HUMAN Slit homolog 2 protein precursor (Sli... 32 3.1 sp|O94313|CARB_SCHPO Carbamoyl-phosphate synthase arginine-... 32 3.1 sp|P46186|RSEB_ECOLI Sigma-E factor regulatory protein rseB... 30 6.9 sp|P39993|GEA2_YEAST ARF guanine-nucleotide exchange factor 2 30 6.9 sp|Q89AY1|DAPE_BUCBP Succinyl-diaminopimelate desuccinylase... 30 8.9
>sp|Q12400|TRM10_YEAST tRNA (guanine-N(1)-)-methyltransferase TRM10 (tRNA methyltransferase 10) Length = 293 Score = 68.2 bits (165), Expect = 3e-11 Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 3/190 (1%) Frame = +1 Query: 259 KIVFDFSFENDMNRREIKGTVKQVLECYGFNRKLSEPYQLGIVNLQPGSIGFSDLNNMF- 435 +I+ D SF+ MN +EI QV Y NR+ + ++ + L F Sbjct: 96 EIILDCSFDELMNDKEIVSLSNQVTRAYSANRRANHFAEIKVAPFD------KRLKQRFE 149 Query: 436 LSHKSNRFEILENTSFRIDQRPL--TEVYSRKELIYLSPNSSNIFEEGEYDHDATFVIGG 609 + K+ +E + F D + + E S+ +++YL+ ++ E+ E +++GG Sbjct: 150 TTLKNTNYENWNHFKFLPDDKIMFGDEHISKDKIVYLTADTEEKLEKLE--PGMRYIVGG 207 Query: 610 LVDLSEQLPLTLAKARKEGLKHRSLPLDRHINWVKGNKSLPLRQVFEILSIARETNGNWR 789 +VD + L L KA+K G+ R LP+D +IN ++G + L V +++ + + NW+ Sbjct: 208 IVDKNRYKELCLKKAQKMGIPTRRLPIDEYIN-LEGRRVLTTTHVVQLM-LKYFDDHNWK 265 Query: 790 SALRHSLPPR 819 +A LPPR Sbjct: 266 NAFESVLPPR 275
>sp|Q09287|YQK3_CAEEL Hypothetical protein C56G2.3 in chromosome III Length = 318 Score = 55.5 bits (132), Expect = 2e-07 Identities = 56/278 (20%), Positives = 111/278 (39%), Gaps = 18/278 (6%) Frame = +1 Query: 40 LLCLSCHQRVKYLIYLAKIEFAQANRRAKVLKNAAKEKFFIENTNTFF---GKYFN---- 198 L+C S + ++ Y YLA + + +R A K +E + G + Sbjct: 10 LICESINDKIGYWEYLAVTDKRRRSRNKAQSSGAENYKKVLEEQQRIYTAGGMGYGPEMY 69 Query: 199 ----------KKLSDLEIQRAFQSIVLNNQKIVFDFSFENDMNRREIKGTVKQVLECYGF 348 K+++++E + F ++ +I D + +MN+R+ Q+ Sbjct: 70 QVISNPMRNQKRVNNIEGSKIFAAMNSGAPRIALDIQYVEEMNKRDSGELGNQMQYTISE 129 Query: 349 NRKLSEPYQLGIVNLQPGSIGFSDLNNMFLSHKSNRFEILENTSFRIDQRPLTEVYSRK- 525 N P+ L VN P + + + + + I + + + E Y + Sbjct: 130 NFSAKSPFVLDFVN-SPSKEFLEQWLSKSVGYYTGNY-INQTILPDFSTKGIKEFYGKSA 187 Query: 526 ELIYLSPNSSNIFEEGEYDHDATFVIGGLVDLSEQLPLTLAKARKEGLKHRSLPLDRHIN 705 IY+S N+ ++ + G D VIG V + + L+ AR+ ++ LP+ R++ Sbjct: 188 NTIYISSNARDVLD-GPLTAD---VIGICVTMGRKRE-ALSAARRANIRAYRLPIHRYVK 242 Query: 706 WVKGNKSLPLRQVFEILSIARETNGNWRSALRHSLPPR 819 W G + LP + +L G+W AL +++ R Sbjct: 243 WKSGPQYLPFPNIMNVLREVYMNGGDWSRALHNNISKR 280
>sp|Q75A17|TRM10_ASHGO tRNA (guanine-N(1)-)-methyltransferase (tRNA methyltransferase 10) Length = 296 Score = 50.8 bits (120), Expect = 5e-06 Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 5/201 (2%) Frame = +1 Query: 259 KIVFDFSFENDMNRREIKGTVKQVLECYGFNRKLSEPYQLGIVNLQPG-----SIGFSDL 423 K++ D +F+ MN +EI Q+ Y N++ + + + + G Sbjct: 98 KVIIDCAFDELMNEKEIVSLSTQITRAYSANKRENHFADVKVTSFNKRLKERFDCGLKGA 157 Query: 424 NNMFLSHKSNRFEILENTSFRIDQRPLTEVYSRKELIYLSPNSSNIFEEGEYDHDATFVI 603 N H FE + ++ P T +YL+ ++ E E T+++ Sbjct: 158 NYDAWKH----FEFTDESAL-----PTTNA------VYLTADTDETLETLE--PGTTYIV 200 Query: 604 GGLVDLSEQLPLTLAKARKEGLKHRSLPLDRHINWVKGNKSLPLRQVFEILSIARETNGN 783 GG+VD + L KA++ G+ R LP+ +I + G K L V +I+ + N + Sbjct: 201 GGIVDKNRHKALCYNKAKELGIPTRRLPIGEYIK-LCGRKVLTTTHVIQIM-LRYFDNHD 258 Query: 784 WRSALRHSLPPRIVTPIGHRA 846 W+ A LP R + + A Sbjct: 259 WKEAFESVLPARKLAELADHA 279
>sp|Q8WXR4|MYO3B_HUMAN Myosin IIIB Length = 1341 Score = 32.3 bits (72), Expect = 1.8 Identities = 31/128 (24%), Positives = 67/128 (52%), Gaps = 7/128 (5%) Frame = +1 Query: 118 RAKVLKNAAKEKFFIENTNTFFGKYFNKKLSDLEI--QRAFQSIVLNNQKIVFDFSFEND 291 +++V+K AA+EK F + G + KKLSD + ++ + I +++ D + + Sbjct: 518 KSRVIKQAAREKNFHIFYYIYAGLHHQKKLSDFRLPEEKPPRYIADETGRVMHDIT-SKE 576 Query: 292 MNRREIKGTVKQVLECYGF-NRKLSEPYQL--GIVNLQPGSIGFSDLNNMFLSHKSN--R 456 RR+ + ++ GF ++++ Y++ GI+N+ G+I F+ +++ + KS Sbjct: 577 SYRRQFE-AIQHCFRIIGFTDKEVHSVYRILAGILNI--GNIEFAAISSQHQTDKSEVPN 633 Query: 457 FEILENTS 480 E L+N + Sbjct: 634 AEALQNAA 641
>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein precursor (Slit-2) [Contains: Slit homolog 2 protein N-product; Slit homolog 2 protein C-product] Length = 1529 Score = 31.6 bits (70), Expect = 3.1 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Frame = +1 Query: 118 RAKVLKNAAKEKFFIENTNTFFGKYFNKKLSDLEIQRAFQ----SIVLNNQKI------V 267 ++K + +AKE++FI T + K +DL + ++ +NQK+ + Sbjct: 472 KSKKFRCSAKEQYFIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNKIPEHI 531 Query: 268 FDFSFENDMNRREIKGTVKQVLECYGFNRKLSEPYQLG-----IVNLQPGSI-GFSDLNN 429 ++ E +N E VLE G +KL + ++ I +++ G+ G S +N Sbjct: 532 PQYTAELRLNNNEF-----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 586 Query: 430 MFLSHKSNRFEILENTSFR 486 + L+ SNR E +++ F+ Sbjct: 587 ILLT--SNRLENVQHKMFK 603
>sp|O94313|CARB_SCHPO Carbamoyl-phosphate synthase arginine-specific large chain (Arginine-specific carbamoyl-phosphate synthetase, ammonia chain) Length = 1160 Score = 31.6 bits (70), Expect = 3.1 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 10/156 (6%) Frame = +1 Query: 301 REIKGTVKQVLECYGFNRKLSEPYQLGIVNLQPGSIG-----FSDLNNMFLSHKSNRF-- 459 REI ++K V E R E Q + + P +G F DL+N RF Sbjct: 447 REIGSSMKSVGEVMAVGRTFEESLQKALRQVDPSFLGFMAMPFKDLDNALSVPTDRRFFA 506 Query: 460 --EILENTSFRIDQ-RPLTEVYSRKELIYLSPNSSNIFEEGEYDHDATFVIGGLVDLSEQ 630 E + N + ID+ LT++ K + N + +++E E IG L L+++ Sbjct: 507 VVEAMLNQGYSIDKIHDLTKI--DKWFLSKLANMAKVYKELE-------EIGSLYGLNKE 557 Query: 631 LPLTLAKARKEGLKHRSLPLDRHINWVKGNKSLPLR 738 + L +A+K G D I+ + G L +R Sbjct: 558 IML---RAKKTGFS------DLQISKLVGASELDVR 584
>sp|P46186|RSEB_ECOLI Sigma-E factor regulatory protein rseB precursor Length = 318 Score = 30.4 bits (67), Expect = 6.9 Identities = 32/178 (17%), Positives = 70/178 (39%), Gaps = 40/178 (22%) Frame = +1 Query: 433 FLSHKSNRFEILENTSFRIDQRPLTEVYS----RKELI-------YLSPNSSNIFEEGEY 579 F+S E L R+D RPL ++ R+E++ Y P G+Y Sbjct: 47 FISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDY 106 Query: 580 DHDAT----------------FVIGGLVDLSEQLPLTLAKARKEGLKHRSLPLDRHINWV 711 D+ F+ G ++++L + ++G ++ +I W+ Sbjct: 107 IVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYS------YIVWM 160 Query: 712 KGNKSLPLR-----------QVFEILS--IARETNGNWRSALRHSLPPRIVTPIGHRA 846 LP+R + F +++ + ++ + + ++ + +LPP + P+G +A Sbjct: 161 DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA 218
>sp|P39993|GEA2_YEAST ARF guanine-nucleotide exchange factor 2 Length = 1459 Score = 30.4 bits (67), Expect = 6.9 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +1 Query: 97 EFAQANRRAKVLKNAAKEKFFIENTNTFFGKYFNKKLSDLEIQRAFQSIVLNNQKIVFDF 276 EF + ++LK ++ FIE TN F K KK + I++ F I ++ K + +F Sbjct: 543 EFGRQKNEMEILKKRDRKTEFIECTNAFNEK--PKKGIPMLIEKGF--IASDSDKDIAEF 598 Query: 277 SFEND--MNRREI 309 F N+ MN++ I Sbjct: 599 LFNNNNRMNKKTI 611
>sp|Q89AY1|DAPE_BUCBP Succinyl-diaminopimelate desuccinylase (SDAP) Length = 377 Score = 30.0 bits (66), Expect = 8.9 Identities = 19/67 (28%), Positives = 37/67 (55%) Frame = +1 Query: 163 ENTNTFFGKYFNKKLSDLEIQRAFQSIVLNNQKIVFDFSFENDMNRREIKGTVKQVLECY 342 +N N FF + ++ D+E + + ++V + + F+F F N++ +IK V+ +L+ Sbjct: 221 DNGNVFFSPT-SVQIYDIESKSSSDNMVPSELTVKFNFRFSNEITSSDIKKKVELLLK-- 277 Query: 343 GFNRKLS 363 FN K S Sbjct: 278 HFNLKYS 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,745,306
Number of Sequences: 369166
Number of extensions: 2108581
Number of successful extensions: 6019
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6016
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
