Planaria EST Database

DrC_00239

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00239
         (1349 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O35986|ZN265_RAT  Zinc finger protein 265 (Zinc finger, s...   181   4e-45
sp|O95218|ZN265_HUMAN  Zinc finger protein 265 (Zinc finger,...   181   4e-45
sp|Q9R020|ZN265_MOUSE  Zinc finger protein 265 (Zinc finger,...   179   1e-44
sp|Q8GZ43|YZR3_ARATH  Hypothetical RanBP2-type zinc-finger p...    54   1e-06
sp|Q92804|RBP56_HUMAN  TATA-binding protein associated facto...    50   1e-05
sp|Q27294|CAZ_DROME  RNA-binding protein cabeza (Sarcoma-ass...    48   7e-05
sp|Q61545|EWS_MOUSE  RNA-binding protein EWS                       42   0.003
sp|Q01844|EWS_HUMAN  RNA-binding protein EWS (EWS oncogene) ...    42   0.003
sp|P56959|FUS_MOUSE  RNA-binding protein FUS (Pigpen protein)      41   0.009
sp|P35637|FUS_HUMAN  RNA-binding protein FUS (Oncogene FUS) ...    41   0.009

>sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, splicing)
          Length = 332

 Score =  181 bits (459), Expect = 4e-45
 Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
 Frame = +3

Query: 18  LTKGNWMCPDESCGNMNFPKRDKCNRCGKKKKEASKV----GIEIGKAIAEKSKGLFSAD 185
           ++ G+W+CPD+ CGN+NF +R  CNRCG++K   +K+    G EIGK +AEKS+GLFSA+
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSAN 67

Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDE 365
           DW CK+C N+NWARR+ CN+CNT K     +RTGYGGGF ER E VEYI+R +SD EYDE
Sbjct: 68  DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNER-ENVEYIEREESDGEYDE 126

Query: 366 FGMKKKKYRG 395
           FG KKKKYRG
Sbjct: 127 FGRKKKKYRG 136

>sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger, splicing)
          Length = 337

 Score =  181 bits (459), Expect = 4e-45
 Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
 Frame = +3

Query: 18  LTKGNWMCPDESCGNMNFPKRDKCNRCGKKKKEASKV----GIEIGKAIAEKSKGLFSAD 185
           ++ G+W+CPD+ CGN+NF +R  CNRCG++K   +K+    G EIGK +AEKS+GLFSA+
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSAN 67

Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDE 365
           DW CK+C N+NWARR+ CN+CNT K     +RTGYGGGF ER E VEYI+R +SD EYDE
Sbjct: 68  DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNER-ENVEYIEREESDGEYDE 126

Query: 366 FGMKKKKYRG 395
           FG KKKKYRG
Sbjct: 127 FGRKKKKYRG 136

>sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger, splicing)
          Length = 326

 Score =  179 bits (455), Expect = 1e-44
 Identities = 79/130 (60%), Positives = 102/130 (78%), Gaps = 4/130 (3%)
 Frame = +3

Query: 18  LTKGNWMCPDESCGNMNFPKRDKCNRCGKKKKEASKV----GIEIGKAIAEKSKGLFSAD 185
           ++ G+W+CPD+ CGN+NF +R  CNRCG++K   +K+    G EIGK +AEKS+GLFSA+
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSAN 67

Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDE 365
           DW CK+C N+NWARR+ C++CNT K     +RTGYGGGF ER E+VEYI+R +SD EYDE
Sbjct: 68  DWQCKTCSNVNWARRSECDMCNTPKYAKLEERTGYGGGFNER-ESVEYIEREESDGEYDE 126

Query: 366 FGMKKKKYRG 395
           FG KKKKYRG
Sbjct: 127 FGRKKKKYRG 136

>sp|Q8GZ43|YZR3_ARATH Hypothetical RanBP2-type zinc-finger protein At1g67325
          Length = 288

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 3   SSKTSLTKGN-WMCPDESCGNMNFPKRDKCNRCGKKKKEASKVGIEIGKAIAEKSKGLFS 179
           S K   T+ N W CP+  CGN+NF  R  CN    +K    K G + G +  + SK    
Sbjct: 187 SQKRDSTRDNDWTCPN--CGNVNFSFRTVCNM---RKCNTPKPGSQQGGSSDKISKQNAP 241

Query: 180 ADDWMCKSCGNINWARRTACN 242
              W C +CGNIN+  R+ CN
Sbjct: 242 EGSWKCDNCGNINYPFRSKCN 262


 Score = 41.6 bits (96), Expect = 0.005
 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +3

Query: 183 DDWMCKSCGNINWARRTACNI--CNTSKVNTQ 272
           +DW C +CGN+N++ RT CN+  CNT K  +Q
Sbjct: 196 NDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQ 227


 Score = 41.2 bits (95), Expect = 0.007
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 183 DDWMCKSCGNINWARRTACNICNTSK 260
           DDW+C SCGN+N++ RT CN+ N ++
Sbjct: 24  DDWICPSCGNVNFSFRTTCNMRNCTQ 49


 Score = 40.8 bits (94), Expect = 0.009
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +3

Query: 6   SKTSLTKGNWMCPDESCGNMNFPKRDKCNR--CGKKK 110
           SK +  +G+W C  ++CGN+N+P R KCNR  CG  K
Sbjct: 236 SKQNAPEGSWKC--DNCGNINYPFRSKCNRQNCGADK 270


 Score = 30.8 bits (68), Expect = 9.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 30 NWMCPDESCGNMNFPKRDKCN 92
          +W+CP  SCGN+NF  R  CN
Sbjct: 25 DWICP--SCGNVNFSFRTTCN 43

>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
           (TAFII68) (TAF(II)68)
          Length = 592

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +3

Query: 27  GNWMCPDESCGNMNFPKRDKCNRCGKKKKEASK 125
           G+W+CP+ SCGNMNF +R+ CN+C + + E S+
Sbjct: 356 GDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSR 388


 Score = 38.9 bits (89), Expect = 0.035
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
 Frame = +3

Query: 186 DWMCK--SCGNINWARRTACNICNTSKVNTQG------QRTGYGG 296
           DW+C   SCGN+N+ARR +CN CN  +           +  GYGG
Sbjct: 357 DWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGG 401

>sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-associated RNA-binding fly
           homolog) (P19)
          Length = 399

 Score = 47.8 bits (112), Expect = 7e-05
 Identities = 20/40 (50%), Positives = 23/40 (57%)
 Frame = +3

Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFY 305
           DW C SC N N+A R  CN C T K + +G   G GGG Y
Sbjct: 278 DWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGY 317


 Score = 33.9 bits (76), Expect = 1.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 27  GNWMCPDESCGNMNFPKRDKCNRCGKKK 110
           G+W C   SC N NF  R++CNRC   K
Sbjct: 277 GDWKC--NSCNNTNFAWRNECNRCKTPK 302

>sp|Q61545|EWS_MOUSE RNA-binding protein EWS
          Length = 655

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 27  GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
           G+W CP+  CGN NF  R +CN+C   K E
Sbjct: 519 GDWQCPNPGCGNQNFAWRTECNQCKAPKPE 548


 Score = 33.9 bits (76), Expect = 1.1
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 180 ADDWMCKS--CGNINWARRTACNICNTSK 260
           A DW C +  CGN N+A RT CN C   K
Sbjct: 518 AGDWQCPNPGCGNQNFAWRTECNQCKAPK 546

>sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint
           region 1 protein)
          Length = 656

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 27  GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
           G+W CP+  CGN NF  R +CN+C   K E
Sbjct: 520 GDWQCPNPGCGNQNFAWRTECNQCKAPKPE 549


 Score = 33.9 bits (76), Expect = 1.1
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 180 ADDWMCKS--CGNINWARRTACNICNTSK 260
           A DW C +  CGN N+A RT CN C   K
Sbjct: 519 AGDWQCPNPGCGNQNFAWRTECNQCKAPK 547

>sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein)
          Length = 518

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 27  GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
           G+W CP+ +C NMNF  R++CN+C   K +
Sbjct: 417 GDWKCPNPTCENMNFSWRNECNQCKAPKPD 446


 Score = 33.1 bits (74), Expect = 1.9
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +3

Query: 180 ADDWMCKS--CGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDD 353
           A DW C +  C N+N++ R  CN C   K    G   G GG          ++  N  DD
Sbjct: 416 AGDWKCPNPTCENMNFSWRNECNQCKAPK--PDGPGGGPGG---------SHMGGNYGDD 464

Query: 354 EYDEFGMKKKKYRG 395
                G  +  YRG
Sbjct: 465 RRGRGGYDRGGYRG 478

>sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated
           in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
           protein)
          Length = 526

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 27  GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
           G+W CP+ +C NMNF  R++CN+C   K +
Sbjct: 424 GDWKCPNPTCENMNFSWRNECNQCKAPKPD 453


 Score = 31.2 bits (69), Expect = 7.2
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = +3

Query: 180 ADDWMCKS--CGNINWARRTACNICNTSKVNTQGQRTG---YGGGFYEREETVEYIDRND 344
           A DW C +  C N+N++ R  CN C   K +  G   G    GG + +        DR  
Sbjct: 423 AGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGD--------DRRG 474

Query: 345 SDDEYDEFGMKKKKYRG 395
               YD  G     YRG
Sbjct: 475 GRGGYDRGG-----YRG 486

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,989,282
Number of Sequences: 369166
Number of extensions: 2376201
Number of successful extensions: 7559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7458
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 15843888650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00239

  1. Dr_sW_015_C24
  2. Dr_sW_006_N06
  3. Dr_sW_025_D01
  4. Dr_sW_027_B07
  5. Dr_sW_022_F17
  6. Dr_sW_013_J06
  7. Dr_sW_007_B02