Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J06
(795 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 38 0.028
sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, s... 36 0.14
sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger,... 36 0.14
sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger,... 36 0.14
sp|Q8WXS8|ATS14_HUMAN ADAMTS-14 precursor (A disintegrin an... 32 1.5
sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethylt... 30 7.6
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 38.1 bits (87), Expect = 0.028
Identities = 18/77 (23%), Positives = 28/77 (36%)
Frame = -1
Query: 240 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 61
+HH H P H + HHH P H H + H + HH ++ H+ +
Sbjct: 197 HHHHHHAPHHH---HHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHD 253
Query: 60 SNGHDIFSFSCQTHRIH 10
++ H H H
Sbjct: 254 AHHHHHHHHDAHHHHHH 270
Score = 33.5 bits (75), Expect = 0.68
Identities = 18/77 (23%), Positives = 25/77 (32%)
Frame = -1
Query: 240 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 61
+HH H P H + HHH P H H H + HH ++ H+
Sbjct: 177 HHHHHHAPHHH---HHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHG 233
Query: 60 SNGHDIFSFSCQTHRIH 10
+ H H H
Sbjct: 234 HHHHHHHHHGHHHHHHH 250
Score = 33.1 bits (74), Expect = 0.89
Identities = 16/64 (25%), Positives = 24/64 (37%)
Frame = -1
Query: 240 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 61
+HH H P H HHH+P H H + H +H ++ H+ E
Sbjct: 93 HHHHHPHPHHH-----HHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEE 147
Query: 60 SNGH 49
+ H
Sbjct: 148 HHHH 151
Score = 31.6 bits (70), Expect = 2.6
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = -1
Query: 240 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 61
+HH H H HHH+ H H + P+ +HH ++ H+
Sbjct: 176 HHHHHHHAPHH-----HHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHH 230
Query: 60 SNGH 49
+GH
Sbjct: 231 HHGH 234
Score = 31.2 bits (69), Expect = 3.4
Identities = 14/57 (24%), Positives = 19/57 (33%)
Frame = -1
Query: 240 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFH 70
+HH H P H HHH+ H H + H +HH + H
Sbjct: 102 HHHHHHPPHHHHHLGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHHH 158
Score = 30.8 bits (68), Expect = 4.4
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = -1
Query: 240 YHHSHRLPKDHI*TNLHHHYPLRVHQHXXXXXXXXXXXX*NQHPNLFRLNHHFYYFHYLE 61
+HH H H + HHH+ H H + P+ +HH + H+
Sbjct: 161 FHHHHLGYHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHH 220
Query: 60 SNGH 49
+GH
Sbjct: 221 HHGH 224
>sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, splicing)
Length = 332
Score = 35.8 bits (81), Expect = 0.14
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 3 SDDEYDEFGMKKKKYRG 53
SD EYDEFG KKKKYRG
Sbjct: 120 SDGEYDEFGRKKKKYRG 136
>sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger, splicing)
Length = 326
Score = 35.8 bits (81), Expect = 0.14
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 3 SDDEYDEFGMKKKKYRG 53
SD EYDEFG KKKKYRG
Sbjct: 120 SDGEYDEFGRKKKKYRG 136
>sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger, splicing)
Length = 337
Score = 35.8 bits (81), Expect = 0.14
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 3 SDDEYDEFGMKKKKYRG 53
SD EYDEFG KKKKYRG
Sbjct: 120 SDGEYDEFGRKKKKYRG 136
>sp|Q8WXS8|ATS14_HUMAN ADAMTS-14 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 14) (ADAM-TS 14) (ADAM-TS14)
Length = 1223
Score = 32.3 bits (72), Expect = 1.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 507 ISHNLPINCAICSGWGTRTPPPRIKGYSNMLGIS 608
+S+ LP++CA+C+ G+RTP + G + G++
Sbjct: 8 LSYLLPLHCALCAAAGSRTPELHLSGKLSDYGVT 41
>sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate
hydroxymethyltransferase)
Length = 262
Score = 30.0 bits (66), Expect = 7.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 563 AATTHQGVLEYARDIRKGRF 622
A+ QGV EYA+D+R+GRF
Sbjct: 236 ASLIRQGVREYAKDVREGRF 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,046,696
Number of Sequences: 369166
Number of extensions: 1181829
Number of successful extensions: 3433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3369
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)