Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B07
(455 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WXS8|ATS14_HUMAN ADAMTS-14 precursor (A disintegrin an... 32 0.51
sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethylt... 30 2.5
sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis... 29 4.3
sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytos... 29 5.6
>sp|Q8WXS8|ATS14_HUMAN ADAMTS-14 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 14) (ADAM-TS 14) (ADAM-TS14)
Length = 1223
Score = 32.3 bits (72), Expect = 0.51
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 163 ISHNLPINCAICSGWGTRTPPPRIKGYSNMLGIS 264
+S+ LP++CA+C+ G+RTP + G + G++
Sbjct: 8 LSYLLPLHCALCAAAGSRTPELHLSGKLSDYGVT 41
>sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate
hydroxymethyltransferase)
Length = 262
Score = 30.0 bits (66), Expect = 2.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 219 AATTHQGVLEYARDIRKGRF 278
A+ QGV EYA+D+R+GRF
Sbjct: 236 ASLIRQGVREYAKDVREGRF 255
>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 (Rab3-interacting
molecule 1) (RIM 1)
Length = 1615
Score = 29.3 bits (64), Expect = 4.3
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 34 PKKAVDGEVAESKKQRKQKMERSRFASE 117
P+K +G VAE +KQRK++ ++R+ S+
Sbjct: 353 PEKRDNGRVAEDQKQRKEEEYQTRYRSD 380
>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 (Rab3-interacting
molecule 1) (RIM 1) (Rab3 interacting protein 1)
Length = 388
Score = 28.9 bits (63), Expect = 5.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 37 KKAVDGEVAESKKQRKQKMERSRFASE 117
+K DG VAE +KQRK++ ++R+ S+
Sbjct: 354 EKREDGRVAEDEKQRKEEEYQTRYRSD 380
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,368,410
Number of Sequences: 369166
Number of extensions: 845555
Number of successful extensions: 1909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)