Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_N06
(949 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, s... 181 3e-45
sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger,... 181 3e-45
sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger,... 179 8e-45
sp|Q8GZ43|YZR3_ARATH Hypothetical RanBP2-type zinc-finger p... 54 8e-07
sp|Q92804|RBP56_HUMAN TATA-binding protein associated facto... 50 7e-06
sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-ass... 48 5e-05
sp|Q61545|EWS_MOUSE RNA-binding protein EWS 42 0.002
sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) ... 42 0.002
sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein) 41 0.006
sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) ... 41 0.006
>sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, splicing)
Length = 332
Score = 181 bits (459), Expect = 3e-45
Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
Frame = +3
Query: 18 LTKGNWMCPDESCGNMNFPKRDKCNRCGKKKKEASKV----GIEIGKAIAEKSKGLFSAD 185
++ G+W+CPD+ CGN+NF +R CNRCG++K +K+ G EIGK +AEKS+GLFSA+
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSAN 67
Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDE 365
DW CK+C N+NWARR+ CN+CNT K +RTGYGGGF ER E VEYI+R +SD EYDE
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNER-ENVEYIEREESDGEYDE 126
Query: 366 FGMKKKKYRG 395
FG KKKKYRG
Sbjct: 127 FGRKKKKYRG 136
>sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger, splicing)
Length = 337
Score = 181 bits (459), Expect = 3e-45
Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
Frame = +3
Query: 18 LTKGNWMCPDESCGNMNFPKRDKCNRCGKKKKEASKV----GIEIGKAIAEKSKGLFSAD 185
++ G+W+CPD+ CGN+NF +R CNRCG++K +K+ G EIGK +AEKS+GLFSA+
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSAN 67
Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDE 365
DW CK+C N+NWARR+ CN+CNT K +RTGYGGGF ER E VEYI+R +SD EYDE
Sbjct: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNER-ENVEYIEREESDGEYDE 126
Query: 366 FGMKKKKYRG 395
FG KKKKYRG
Sbjct: 127 FGRKKKKYRG 136
>sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger, splicing)
Length = 326
Score = 179 bits (455), Expect = 8e-45
Identities = 79/130 (60%), Positives = 102/130 (78%), Gaps = 4/130 (3%)
Frame = +3
Query: 18 LTKGNWMCPDESCGNMNFPKRDKCNRCGKKKKEASKV----GIEIGKAIAEKSKGLFSAD 185
++ G+W+CPD+ CGN+NF +R CNRCG++K +K+ G EIGK +AEKS+GLFSA+
Sbjct: 8 VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSAN 67
Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDDEYDE 365
DW CK+C N+NWARR+ C++CNT K +RTGYGGGF ER E+VEYI+R +SD EYDE
Sbjct: 68 DWQCKTCSNVNWARRSECDMCNTPKYAKLEERTGYGGGFNER-ESVEYIEREESDGEYDE 126
Query: 366 FGMKKKKYRG 395
FG KKKKYRG
Sbjct: 127 FGRKKKKYRG 136
>sp|Q8GZ43|YZR3_ARATH Hypothetical RanBP2-type zinc-finger protein At1g67325
Length = 288
Score = 53.5 bits (127), Expect = 8e-07
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 3 SSKTSLTKGN-WMCPDESCGNMNFPKRDKCNRCGKKKKEASKVGIEIGKAIAEKSKGLFS 179
S K T+ N W CP+ CGN+NF R CN +K K G + G + + SK
Sbjct: 187 SQKRDSTRDNDWTCPN--CGNVNFSFRTVCNM---RKCNTPKPGSQQGGSSDKISKQNAP 241
Query: 180 ADDWMCKSCGNINWARRTACN 242
W C +CGNIN+ R+ CN
Sbjct: 242 EGSWKCDNCGNINYPFRSKCN 262
Score = 41.6 bits (96), Expect = 0.003
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +3
Query: 183 DDWMCKSCGNINWARRTACNI--CNTSKVNTQ 272
+DW C +CGN+N++ RT CN+ CNT K +Q
Sbjct: 196 NDWTCPNCGNVNFSFRTVCNMRKCNTPKPGSQ 227
Score = 41.2 bits (95), Expect = 0.004
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 183 DDWMCKSCGNINWARRTACNICNTSK 260
DDW+C SCGN+N++ RT CN+ N ++
Sbjct: 24 DDWICPSCGNVNFSFRTTCNMRNCTQ 49
Score = 40.8 bits (94), Expect = 0.006
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 6 SKTSLTKGNWMCPDESCGNMNFPKRDKCNR--CGKKK 110
SK + +G+W C ++CGN+N+P R KCNR CG K
Sbjct: 236 SKQNAPEGSWKC--DNCGNINYPFRSKCNRQNCGADK 270
Score = 30.8 bits (68), Expect = 5.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 30 NWMCPDESCGNMNFPKRDKCN 92
+W+CP SCGN+NF R CN
Sbjct: 25 DWICP--SCGNVNFSFRTTCN 43
>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
(TAFII68) (TAF(II)68)
Length = 592
Score = 50.4 bits (119), Expect = 7e-06
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = +3
Query: 27 GNWMCPDESCGNMNFPKRDKCNRCGKKKKEASK 125
G+W+CP+ SCGNMNF +R+ CN+C + + E S+
Sbjct: 356 GDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSR 388
Score = 38.9 bits (89), Expect = 0.021
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Frame = +3
Query: 186 DWMCK--SCGNINWARRTACNICNTSKVNTQG------QRTGYGG 296
DW+C SCGN+N+ARR +CN CN + + GYGG
Sbjct: 357 DWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGG 401
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-associated RNA-binding fly
homolog) (P19)
Length = 399
Score = 47.8 bits (112), Expect = 5e-05
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +3
Query: 186 DWMCKSCGNINWARRTACNICNTSKVNTQGQRTGYGGGFY 305
DW C SC N N+A R CN C T K + +G G GGG Y
Sbjct: 278 DWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGY 317
Score = 33.9 bits (76), Expect = 0.69
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 27 GNWMCPDESCGNMNFPKRDKCNRCGKKK 110
G+W C SC N NF R++CNRC K
Sbjct: 277 GDWKC--NSCNNTNFAWRNECNRCKTPK 302
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS
Length = 655
Score = 42.4 bits (98), Expect = 0.002
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 27 GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
G+W CP+ CGN NF R +CN+C K E
Sbjct: 519 GDWQCPNPGCGNQNFAWRTECNQCKAPKPE 548
Score = 33.9 bits (76), Expect = 0.69
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 180 ADDWMCKS--CGNINWARRTACNICNTSK 260
A DW C + CGN N+A RT CN C K
Sbjct: 518 AGDWQCPNPGCGNQNFAWRTECNQCKAPK 546
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint
region 1 protein)
Length = 656
Score = 42.4 bits (98), Expect = 0.002
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 27 GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
G+W CP+ CGN NF R +CN+C K E
Sbjct: 520 GDWQCPNPGCGNQNFAWRTECNQCKAPKPE 549
Score = 33.9 bits (76), Expect = 0.69
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 180 ADDWMCKS--CGNINWARRTACNICNTSK 260
A DW C + CGN N+A RT CN C K
Sbjct: 519 AGDWQCPNPGCGNQNFAWRTECNQCKAPK 547
>sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein)
Length = 518
Score = 40.8 bits (94), Expect = 0.006
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 27 GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
G+W CP+ +C NMNF R++CN+C K +
Sbjct: 417 GDWKCPNPTCENMNFSWRNECNQCKAPKPD 446
Score = 33.1 bits (74), Expect = 1.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +3
Query: 180 ADDWMCKS--CGNINWARRTACNICNTSKVNTQGQRTGYGGGFYEREETVEYIDRNDSDD 353
A DW C + C N+N++ R CN C K G G GG ++ N DD
Sbjct: 416 AGDWKCPNPTCENMNFSWRNECNQCKAPK--PDGPGGGPGG---------SHMGGNYGDD 464
Query: 354 EYDEFGMKKKKYRG 395
G + YRG
Sbjct: 465 RRGRGGYDRGGYRG 478
>sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated
in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
protein)
Length = 526
Score = 40.8 bits (94), Expect = 0.006
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 27 GNWMCPDESCGNMNFPKRDKCNRCGKKKKE 116
G+W CP+ +C NMNF R++CN+C K +
Sbjct: 424 GDWKCPNPTCENMNFSWRNECNQCKAPKPD 453
Score = 31.2 bits (69), Expect = 4.5
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +3
Query: 180 ADDWMCKS--CGNINWARRTACNICNTSKVNTQGQRTG---YGGGFYEREETVEYIDRND 344
A DW C + C N+N++ R CN C K + G G GG + + DR
Sbjct: 423 AGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGD--------DRRG 474
Query: 345 SDDEYDEFGMKKKKYRG 395
YD G YRG
Sbjct: 475 GRGGYDRGG-----YRG 486
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,014,070
Number of Sequences: 369166
Number of extensions: 1536042
Number of successful extensions: 5982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5881
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9846996650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)