Planarian EST Database

DrC_00228

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00228 TTGAGTCATCACCATAATCATCATGGTTACTATGAGCAGCCTCGTATTATAATCGAAGAG AGAGGTCCACATCATCGTCATCATCATTCTCCACCAAGAGTTACCGAAGTAATTGTGGGA AACAATTATCCAGCTCCCGTTGTTTACCCAACTGCTACACCGGTCTACCAGGCTGGCTGT CCAAGCCAAACAATAATTTATGAAAATCGCACTGTATACGAACCTGGATATATTGCTCCT GCACATACAACAATCTATCCAGTTGCAGCTCCAGTTTATCCAGCAACTTACACCTATGAG CCTTCGTACGGTTGTGATGTTTATCCTGCTGATTACTATGATCCTGAAGATTATTATTAA TTCGAATATAATTTCCAGTTTTAACTATTCAACATTTTACTCAGAATAAAATTTGATTGT CATAAATACTGAACATTAAGAATCTATTTAGAATACGATCTTGAAGCGATTTTTAGAAAA CTAAATTTATTTTGTTATTATTCATTTATTAATCATAATTATTAATCAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00228
         (529 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q27409|FP1_MYTGA  Adhesive plaque matrix protein precurso...    32   0.72 
sp|Q25460|FP1_MYTED  Adhesive plaque matrix protein (Polyphe...    32   0.95 
sp|P13744|11SB_CUCMA  11S globulin beta subunit precursor [C...    31   1.6  
sp|Q25434|FP1_MYTCO  Adhesive plaque matrix protein precurso...    30   3.6  
sp|O95886|DLGP3_HUMAN  Disks large-associated protein 3 (DAP...    25   7.9  
sp|Q6PFD5|DLGP3_MOUSE  Disks large-associated protein 3 (DAP...    25   7.9  
sp|P97838|DLP3_RAT  Disks large-associated protein 3 (DAP-3)...    25   7.9  
sp|P06719|KNOB_PLAFN  Knob-associated histidine-rich protein...    24   8.1

>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1)
           (MGFP-1)
          Length = 751

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP+TY  +PSY
Sbjct: 283 PSYPSTYKAKPSYPPTYKAKPSYPPTYK-AKPTYPSTYKAKPSY 325


 Score = 32.3 bits (72), Expect = 0.72
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPV---AAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   YP    A P YP TY  +PSY
Sbjct: 633 PSYPPTYKAKPSYPPTYKAKPSYPATYPSTYKAKPSYPPTYKAKPSY 679


 Score = 32.0 bits (71), Expect = 0.95
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P + T Y  A P YP TY  +PSY
Sbjct: 393 PSYLPTYKAKPSYPPTYKAKPRYPTTYK-AKPSYPPTYKAKPSY 435


 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS +  Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 493 PSYSSTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 535


 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ ++ Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 553 PSYPQTYKAKSSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 595


 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 199 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           Y+ +  Y P Y A P++ T Y  A P YP+TY  +PSY
Sbjct: 259 YKPKISYPPTYKAKPSYPTSYR-AKPSYPSTYKAKPSY 295


 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P + + Y  A P YP TY  +PSY
Sbjct: 293 PSYPPTYKAKPSYPPTYKAKPTYPSTYK-AKPSYPPTYKAKPSY 335


 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGY-----------IAPAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +T Y P Y             P++  IY  A P YP TY  +PSY
Sbjct: 343 PSYPPSYKPKTTYPPSYKPKISYPPTYKAKPSYPPIYK-AKPSYPPTYKAKPSY 395


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 433 PSYPPTYKAKLSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 475


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 503 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 545


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 573 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 615


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 583 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 625


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 593 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 635


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 603 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 645


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 613 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 655


 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y   Y A P++++ Y  A P YP TY  +PSY
Sbjct: 473 PSYPPTYKTKPSYPRTYKAKPSYSSTYK-AKPSYPPTYKAKPSY 515

>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphenolic adhesive protein)
           (Foot protein 1) (MEFP1)
          Length = 875

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP+TY  +PSY
Sbjct: 605 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPTYPSTYKAKPSY 647


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y       A P YP+TY  +PSY
Sbjct: 175 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 223


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 285 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 327


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y       A P YP+TY  +PSY
Sbjct: 315 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 363


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 309
           P+    Y+ +  Y P Y A P++   Y       A P YP+TY  +PSY
Sbjct: 423 PTYPSTYKAKPSYPPSYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 471


 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 309
           PS    Y+ +  Y P Y A P++   Y       A P YP+TY  +PSY
Sbjct: 559 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYKAKPTYPSTYKAKPSY 607


 Score = 28.9 bits (63), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 199 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 309
           Y+ +  Y P Y A P++   Y  A P YP TY  +PSY
Sbjct: 535 YKPKISYPPTYKAKPSYPATYK-AKPSYPPTYKAKPSY 571

>sp|P13744|11SB_CUCMA 11S globulin beta subunit precursor [Contains: 11S globulin gamma
           chain (11S globulin acidic chain); 11S globulin delta
           chain (11S globulin basic chain)]
          Length = 480

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 246 MCRSNISRFVYSAIFINYCLAWTASLVDRCSSWVNNGSWIIVSHNY 109
           M RS++  F+  A+FIN CL    S +++ S W   GS +   H Y
Sbjct: 1   MARSSLFTFLCLAVFINGCL----SQIEQQSPWEFQGSEVWQQHRY 42

>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precursor (Foot protein 1) (MCFP1)
          Length = 872

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 181 PSQTIIYENRTVYEPGYIAPAHTTIYPVAAPVYPATYTYEPSY 309
           PS    Y+ +T Y P Y           A P YP TY  +PSY
Sbjct: 716 PSYPASYKRKTSYPPTYKPKISYPSTYKAKPSYPPTYKPKPSY 758

>sp|O95886|DLGP3_HUMAN Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
           protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
          Length = 979

 Score = 24.6 bits (52), Expect(2) = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 7   HHHNHHGYYEQPR 45
           HHH+HH ++ Q R
Sbjct: 225 HHHHHHHHHHQSR 237


 Score = 22.7 bits (47), Expect(2) = 7.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 4   SHHHNHHGYY 33
           SHHH+HH ++
Sbjct: 222 SHHHHHHHHH 231

>sp|Q6PFD5|DLGP3_MOUSE Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
           protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 24.6 bits (52), Expect(2) = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 7   HHHNHHGYYEQPR 45
           HHH+HH ++ Q R
Sbjct: 224 HHHHHHHHHHQSR 236


 Score = 22.7 bits (47), Expect(2) = 7.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 4   SHHHNHHGYY 33
           SHHH+HH ++
Sbjct: 221 SHHHHHHHHH 230

>sp|P97838|DLP3_RAT Disks large-associated protein 3 (DAP-3) (SAP90/PSD-95-associated
           protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 24.6 bits (52), Expect(2) = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 7   HHHNHHGYYEQPR 45
           HHH+HH ++ Q R
Sbjct: 224 HHHHHHHHHHQSR 236


 Score = 22.7 bits (47), Expect(2) = 7.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 4   SHHHNHHGYY 33
           SHHH+HH ++
Sbjct: 221 SHHHHHHHHH 230

>sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein precursor (KAHRP)
          Length = 657

 Score = 24.3 bits (51), Expect(2) = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 7   HHHNHHGYYEQPR 45
           HHH+HH + +QP+
Sbjct: 116 HHHHHHLHPQQPQ 128


 Score = 23.1 bits (48), Expect(2) = 8.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 4   SHHHNHHG 27
           +HHH+HHG
Sbjct: 85  AHHHHHHG 92

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,948,153
Number of Sequences: 369166
Number of extensions: 696161
Number of successful extensions: 2909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2579
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00228

Planaria EST Database

DrC_00228

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail