Planarian EST Database

Dr_sW_018_B16

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_018_B16
         (209 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88277|FAT2_RAT  Protocadherin Fat 2 precursor (Multiple ...    28   5.0  

>sp|O88277|FAT2_RAT Protocadherin Fat 2 precursor (Multiple epidermal growth factor-like
            domains 1)
          Length = 4351

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
 Frame = +2

Query: 2    MVTMSSLVL*SKREVHIIVIIILHQELP---K*LWETI------IQLPLFTQLLHRSTRL 154
            +VT+ +L L S    HI+ +++  QE+P     +W TI      +  P FTQL + +   
Sbjct: 1506 LVTVGTLELHSGPSQHILTVMVRDQEMPIKRNFVWVTIHVEDGNLHSPHFTQLRYEANVP 1565

Query: 155  DVQA 166
            D  A
Sbjct: 1566 DTTA 1569

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.314    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,933,801
Number of Sequences: 369166
Number of extensions: 293623
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)