Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I06
(434 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precurso... 32 0.45
sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphe... 32 0.58
sp|P13744|11SB_CUCMA 11S globulin beta subunit precursor [C... 31 1.00
sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precurso... 30 2.2
sp|Q68FH0|PKP4_MOUSE Plakophilin-4 (Armadillo-related protein) 28 6.5
sp|Q99569|PKP4_HUMAN Plakophilin-4 (p0071) 28 6.5
sp|P05311|PSAB_PEA Photosystem I P700 chlorophyll a apoprot... 28 8.4
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1)
(MGFP-1)
Length = 751
Score = 32.3 bits (72), Expect = 0.45
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 283 PSYPSTYKAKPSYPPTYKAKPSYPPTYK-AKPTYPSTYKAKPSY 325
Score = 32.3 bits (72), Expect = 0.45
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPV---AAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ YP A P YP TY +PSY
Sbjct: 633 PSYPPTYKAKPSYPPTYKAKPSYPATYPSTYKAKPSYPPTYKAKPSY 679
Score = 32.0 bits (71), Expect = 0.58
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P + T Y A P YP TY +PSY
Sbjct: 393 PSYLPTYKAKPSYPPTYKAKPRYPTTYK-AKPSYPPTYKAKPSY 435
Score = 31.6 bits (70), Expect = 0.76
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS + Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 493 PSYSSTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 535
Score = 31.2 bits (69), Expect = 1.00
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ ++ Y P Y A P++ Y A P YP TY +PSY
Sbjct: 553 PSYPQTYKAKSSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 595
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
Y+ + Y P Y A P++ T Y A P YP+TY +PSY
Sbjct: 259 YKPKISYPPTYKAKPSYPTSYR-AKPSYPSTYKAKPSY 295
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P + + Y A P YP TY +PSY
Sbjct: 293 PSYPPTYKAKPSYPPTYKAKPTYPSTYK-AKPSYPPTYKAKPSY 335
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGY-----------IAPAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ +T Y P Y P++ IY A P YP TY +PSY
Sbjct: 343 PSYPPSYKPKTTYPPSYKPKISYPPTYKAKPSYPPIYK-AKPSYPPTYKAKPSY 395
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 433 PSYPPTYKAKLSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 475
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 503 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 545
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 573 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 615
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 583 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 625
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 593 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 635
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 603 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 645
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 613 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 655
Score = 29.3 bits (64), Expect = 3.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y Y A P++++ Y A P YP TY +PSY
Sbjct: 473 PSYPPTYKTKPSYPRTYKAKPSYSSTYK-AKPSYPPTYKAKPSY 515
Score = 28.5 bits (62), Expect = 6.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIAPAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A A P YP TY +PSY
Sbjct: 423 PSYPPTYKAKPSYPPTYKAKLSYPPTYKAKPSYPPTYKAKPSY 465
Score = 28.5 bits (62), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 449 YKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKTKPSY 485
Score = 28.5 bits (62), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 569 YKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 605
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y Y A P++ Y A P YP TY +PSY
Sbjct: 303 PSYPPTYKAKPTYPSTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 345
>sp|Q25460|FP1_MYTED Adhesive plaque matrix protein (Polyphenolic adhesive protein)
(Foot protein 1) (MEFP1)
Length = 875
Score = 32.0 bits (71), Expect = 0.58
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 605 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPTYPSTYKAKPSY 647
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 175 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 223
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 285 PSYPPTYKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 327
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 315 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 363
Score = 30.4 bits (67), Expect = 1.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 243
P+ Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 423 PTYPSTYKAKPSYPPSYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSY 471
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP+TY +PSY
Sbjct: 559 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPSYKAKPTYPSTYKAKPSY 607
Score = 28.9 bits (63), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 535 YKPKISYPPTYKAKPSYPATYK-AKPSYPPTYKAKPSY 571
Score = 28.5 bits (62), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 YENRTVYEPGYIA-PAHTTIYPVAAPVYPATYTYEPSY 243
Y+ + Y P Y A P++ Y A P YP TY +PSY
Sbjct: 281 YKAKPSYPPTYKAKPSYPPTYK-AKPSYPPTYKAKPSY 317
Score = 28.5 bits (62), Expect = 6.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-------PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P + + Y A P YP TY +PSY
Sbjct: 325 PSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYK-AKPSYPPTYKAKPSY 373
Score = 28.5 bits (62), Expect = 6.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-------PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P + + Y A P YPA+Y +PSY
Sbjct: 433 PSYPPSYKAKPSYPPTYKAKPTYKAKPTYPSTYK-AKPSYPASYKAKPSY 481
Score = 28.5 bits (62), Expect = 6.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-------PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P + + Y A P YP TY +PSY
Sbjct: 569 PSYPPTYKAKPSYPPTYKAKPSYKAKPTYPSTYK-AKPSYPPTYKAKPSY 617
Score = 28.1 bits (61), Expect = 8.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-PAHTTIYPV-----AAPVYPATY----TYEPSY 243
PS Y+ + Y P Y A P++ Y A P YP+TY +Y PSY
Sbjct: 387 PSYPPTYKAKPSYPPTYKAKPSYPPTYKAKPTYKAKPTYPSTYKAKPSYPPSY 439
Score = 28.1 bits (61), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIA-------PAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ + Y P Y A P + + Y A P YP TY +PSY
Sbjct: 665 PSYPPTYKAKPSYPPTYKAKPTYKAKPTNPSTYK-AKPSYPPTYKAKPSY 713
>sp|P13744|11SB_CUCMA 11S globulin beta subunit precursor [Contains: 11S globulin gamma
chain (11S globulin acidic chain); 11S globulin delta
chain (11S globulin basic chain)]
Length = 480
Score = 31.2 bits (69), Expect = 1.00
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 180 MCRSNISRFVYSAIFINYCLAWTASLVDRCSSWVNNGSWIIVSHNY 43
M RS++ F+ A+FIN CL S +++ S W GS + H Y
Sbjct: 1 MARSSLFTFLCLAVFINGCL----SQIEQQSPWEFQGSEVWQQHRY 42
>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein precursor (Foot protein 1) (MCFP1)
Length = 872
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 115 PSQTIIYENRTVYEPGYIAPAHTTIYPVAAPVYPATYTYEPSY 243
PS Y+ +T Y P Y A P YP TY +PSY
Sbjct: 716 PSYPASYKRKTSYPPTYKPKISYPSTYKAKPSYPPTYKPKPSY 758
>sp|Q68FH0|PKP4_MOUSE Plakophilin-4 (Armadillo-related protein)
Length = 1190
Score = 28.5 bits (62), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 124 TIIYENRTVYEPGYIAPAHTTI 189
T IYE RT Y P Y +P H T+
Sbjct: 411 TPIYEGRTYYSPVYRSPNHGTV 432
>sp|Q99569|PKP4_HUMAN Plakophilin-4 (p0071)
Length = 1211
Score = 28.5 bits (62), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 124 TIIYENRTVYEPGYIAPAHTTI 189
T IYE RT Y P Y +P H T+
Sbjct: 412 TPIYEGRTYYSPVYRSPNHGTV 433
>sp|P05311|PSAB_PEA Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B)
Length = 734
Score = 28.1 bits (61), Expect = 8.4
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = -3
Query: 216 WINWSCNWIDCCMCRSNISRFVYSAIFINYCLAWTASLVDRCSSWVNNGSWIIVSHNYFG 37
W+ + +W + R N+S+F S+ Y + W + SS + NG +V ++
Sbjct: 589 WVTFYWHWKHITLWRGNVSQFNESS---TYLMGWLRDYLWLNSSQLINGITPLVCNSLSV 645
Query: 36 NSWWRMMMTMMW 1
+W + ++W
Sbjct: 646 WAWMFLFGHLVW 657
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,206,122
Number of Sequences: 369166
Number of extensions: 640648
Number of successful extensions: 1878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)