Planaria EST Database


DrC_00114

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00114
         (753 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31420|OMBP_MANSE  Ommochrome-binding protein precursor (...    33   1.1  
sp|P15650|ACADL_RAT  Acyl-CoA dehydrogenase, long-chain spec...    30   7.0  
sp|O94423|MFR1_SCHPO  Meiotic fizzy-related protein 1              30   7.0  
sp|P51174|ACADL_MOUSE  Acyl-CoA dehydrogenase, long-chain sp...    30   9.1  
>sp|P31420|OMBP_MANSE Ommochrome-binding protein precursor (OBP) (YCP)
          Length = 274

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/72 (26%), Positives = 37/72 (51%)
 Frame = +3

Query: 477 SHSPHFNGWQGLYCHRYPSPPRKLIGVSAMRLRSILLPSDLRVHLHGLIWTHSSQKPVDQ 656
           +H  +  G  G+Y + Y +   K IGV+++ +  +         +HGL +T S +KP   
Sbjct: 98  NHIVYLGGKDGIYTYDYATKSAKNIGVTSLSIWQMFY-----CPIHGLFFTTSDEKP--- 149

Query: 657 QIIKNKQIDVIL 692
            + K+ Q++ I+
Sbjct: 150 YVFKDGQVNQIV 161
>sp|P15650|ACADL_RAT Acyl-CoA dehydrogenase, long-chain specific, mitochondrial
           precursor (LCAD)
          Length = 430

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
 Frame = -3

Query: 661 ICWSTGFCEECVQINPCKCTRRSDGRSIDLSR---------IADTPINFLGGDGYLWQY 512
           IC +  F + C+Q++    T+R D  S  +++         +A   +   GG GY+W+Y
Sbjct: 341 ICVTRAFVDSCLQLHE---TKRLDSASASMAKYWASELQNTVAYQCVQLHGGWGYMWEY 396
>sp|O94423|MFR1_SCHPO Meiotic fizzy-related protein 1
          Length = 421

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
 Frame = -3

Query: 526 YLWQYSPCQPLKCGECEQQVALCKKLGYSENTAGYLGSAKFQIDDXXXXXXXXXXXXXXX 347
           ++W Y   +PL   + E+  A  K +G+S +  G L S    ID                
Sbjct: 274 FVWDYRSSRPLH--KFEEHTAAVKAIGWSPHQRGILASGGGTIDRCLTIHNTLTGRLQNK 331

Query: 346 XXXXNVVCNQKYEGT---IIYDYEYPQNQIYL 260
               + VCN  +  T   I+  + + +NQ+ L
Sbjct: 332 LDTGSQVCNMAWSKTSNEIVTTHGFAKNQVSL 363
>sp|P51174|ACADL_MOUSE Acyl-CoA dehydrogenase, long-chain specific, mitochondrial
           precursor (LCAD)
          Length = 430

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
 Frame = -3

Query: 661 ICWSTGFCEECVQINPCKCTRRSDGRSIDLSR---------IADTPINFLGGDGYLWQY 512
           IC +  F + C+Q++    T+R D  S  +++         +A   +   GG GY+W+Y
Sbjct: 341 ICVTRAFVDSCLQLHE---TKRLDSGSASMAKYWASELQNSVAYECVQLHGGWGYMWEY 396
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,134,803
Number of Sequences: 369166
Number of extensions: 1344045
Number of successful extensions: 3717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00114

  1. Dr_sW_022_I01
  2. Dr_sW_003_O04
  3. Dr_sW_004_L02