Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_I01
(342 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P44569|5NTD_HAEIN Probable 5'-nucleotidase precursor 28 6.6
sp|Q8F8N2|TRUD_LEPIN tRNA pseudouridine synthase D (tRNA-ur... 28 6.6
sp|Q9J558|V175_FOWPV Protein FPV175 28 8.6
>sp|P44569|5NTD_HAEIN Probable 5'-nucleotidase precursor
Length = 603
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 32 KYEGTIIYDYEYPQNQIYLTFLTKHACFNDHVESNIESNTES 157
KYEG Y P + ++ F+ KH F + SN++ N +
Sbjct: 559 KYEGVDTY---LPDAESFIKFMKKHPHFEAYTSSNVKFNAST 597
>sp|Q8F8N2|TRUD_LEPIN tRNA pseudouridine synthase D (tRNA-uridine isomerase D) (tRNA
pseudouridylate synthase D)
sp|Q72N01|TRUD_LEPIC tRNA pseudouridine synthase D (tRNA-uridine isomerase D) (tRNA
pseudouridylate synthase D)
Length = 408
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 335 NFIKIENTNFINIFHQTQSKRFHELFRI 252
NF KI FIN + + RFH FR+
Sbjct: 141 NFEKITKNGFINYYDSQRFSRFHSEFRL 168
>sp|Q9J558|V175_FOWPV Protein FPV175
Length = 274
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 8 TINVVCNQK---YEGTIIYDYEYPQNQIYLTFLTKHACFNDHVESNIESN 148
TINVV + YE + Y+ + ++ ++ + H FND ++ I+SN
Sbjct: 44 TINVVLTTRSDNYEKDVTYNDDDDHDRCIVSEIGSHHSFNDEKDNYIQSN 93
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,661,690
Number of Sequences: 369166
Number of extensions: 337339
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)