Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_O04
(688 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31420|OMBP_MANSE Ommochrome-binding protein precursor (... 33 0.92
sp|P15650|ACADL_RAT Acyl-CoA dehydrogenase, long-chain spec... 30 6.0
sp|P81608|SAL_PIG Salivary lipocalin precursor (SAL) 30 6.0
sp|Q8ZQR6|MODC_SALTY Molybdenum import ATP-binding protein ... 30 7.8
sp|P09833|MODC_ECOLI Molybdenum import ATP-binding protein ... 30 7.8
sp|P59738|MODC_SHIFL Molybdenum import ATP-binding protein ... 30 7.8
sp|Q8X4V7|MODC_ECO57 Molybdenum import ATP-binding protein ... 30 7.8
sp|Q8Z8A4|MODC_SALTI Molybdenum import ATP-binding protein ... 30 7.8
sp|Q8FJR4|MODC_ECOL6 Molybdenum import ATP-binding protein ... 30 7.8
sp|P51174|ACADL_MOUSE Acyl-CoA dehydrogenase, long-chain sp... 30 7.8
>sp|P31420|OMBP_MANSE Ommochrome-binding protein precursor (OBP) (YCP)
Length = 274
Score = 32.7 bits (73), Expect = 0.92
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +3
Query: 468 SHSPHFNGWQGLYCHRYPSPPRKLIGVSAMRLRSILLPSDLRVHLHGLIWTHSSQKPVDQ 647
+H + G G+Y + Y + K IGV+++ + + +HGL +T S +KP
Sbjct: 98 NHIVYLGGKDGIYTYDYATKSAKNIGVTSLSIWQMFY-----CPIHGLFFTTSDEKP--- 149
Query: 648 QIIKNKQIDVIL 683
+ K+ Q++ I+
Sbjct: 150 YVFKDGQVNQIV 161
>sp|P15650|ACADL_RAT Acyl-CoA dehydrogenase, long-chain specific, mitochondrial
precursor (LCAD)
Length = 430
Score = 30.0 bits (66), Expect = 6.0
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Frame = -1
Query: 652 ICWSTGFCEECVQINPCKCTRRSDGRSIDLSR---------IADTPINFLGGDGYLWQY 503
IC + F + C+Q++ T+R D S +++ +A + GG GY+W+Y
Sbjct: 341 ICVTRAFVDSCLQLHE---TKRLDSASASMAKYWASELQNTVAYQCVQLHGGWGYMWEY 396
>sp|P81608|SAL_PIG Salivary lipocalin precursor (SAL)
Length = 191
Score = 30.0 bits (66), Expect = 6.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 478 GECEQQVALCKKLGNSENTAGYLGTAKFQIDDNN 377
GEC A+C K+G+ T Y G KF++ + N
Sbjct: 82 GECTDFYAVCDKVGDGVYTVAYYGENKFRLLEVN 115
>sp|Q8ZQR6|MODC_SALTY Molybdenum import ATP-binding protein modC
Length = 352
Score = 29.6 bits (65), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 385 RQFEILQYLNNLLCSLNYPIFYIKQLVAHILHIS 486
R+ E+L YL L +N P+ Y+ + ILH++
Sbjct: 163 RKRELLPYLQRLAREINIPMLYVSHSLDEILHLA 196
>sp|P09833|MODC_ECOLI Molybdenum import ATP-binding protein modC
Length = 352
Score = 29.6 bits (65), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 385 RQFEILQYLNNLLCSLNYPIFYIKQLVAHILHIS 486
R+ E+L YL L +N P+ Y+ + ILH++
Sbjct: 163 RKRELLPYLQRLTREINIPMLYVSHSLDEILHLA 196
>sp|P59738|MODC_SHIFL Molybdenum import ATP-binding protein modC
Length = 352
Score = 29.6 bits (65), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 385 RQFEILQYLNNLLCSLNYPIFYIKQLVAHILHIS 486
R+ E+L YL L +N P+ Y+ + ILH++
Sbjct: 163 RKRELLPYLQRLTREINIPMLYVSHSLDEILHLA 196
>sp|Q8X4V7|MODC_ECO57 Molybdenum import ATP-binding protein modC
Length = 352
Score = 29.6 bits (65), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 385 RQFEILQYLNNLLCSLNYPIFYIKQLVAHILHIS 486
R+ E+L YL L +N P+ Y+ + ILH++
Sbjct: 163 RKRELLPYLQRLTREINIPMLYVSHSLDEILHLA 196
>sp|Q8Z8A4|MODC_SALTI Molybdenum import ATP-binding protein modC
Length = 352
Score = 29.6 bits (65), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 385 RQFEILQYLNNLLCSLNYPIFYIKQLVAHILHIS 486
R+ E+L YL L +N P+ Y+ + ILH++
Sbjct: 163 RKRELLPYLQRLAREINIPMLYVSHSLDEILHLA 196
>sp|Q8FJR4|MODC_ECOL6 Molybdenum import ATP-binding protein modC
Length = 352
Score = 29.6 bits (65), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 385 RQFEILQYLNNLLCSLNYPIFYIKQLVAHILHIS 486
R+ E+L YL L +N P+ Y+ + ILH++
Sbjct: 163 RKRELLPYLQRLTREINIPMLYVSHSLDEILHLA 196
>sp|P51174|ACADL_MOUSE Acyl-CoA dehydrogenase, long-chain specific, mitochondrial
precursor (LCAD)
Length = 430
Score = 29.6 bits (65), Expect = 7.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Frame = -1
Query: 652 ICWSTGFCEECVQINPCKCTRRSDGRSIDLSR---------IADTPINFLGGDGYLWQY 503
IC + F + C+Q++ T+R D S +++ +A + GG GY+W+Y
Sbjct: 341 ICVTRAFVDSCLQLHE---TKRLDSGSASMAKYWASELQNSVAYECVQLHGGWGYMWEY 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,827,696
Number of Sequences: 369166
Number of extensions: 1254510
Number of successful extensions: 3520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3519
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)