Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L02
(752 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31420|OMBP_MANSE Ommochrome-binding protein precursor (... 33 0.82
sp|P15650|ACADL_RAT Acyl-CoA dehydrogenase, long-chain spec... 30 7.0
sp|P51174|ACADL_MOUSE Acyl-CoA dehydrogenase, long-chain sp... 30 9.1
>sp|P31420|OMBP_MANSE Ommochrome-binding protein precursor (OBP) (YCP)
Length = 274
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +2
Query: 476 SHCPHFNGWQGLYCHRYPSPPRKLIGVSAMRLRSILLPSDLRVHLHGLIWTHSSQKPVDQ 655
+H + G G+Y + Y + K IGV+++ + + +HGL +T S +KP
Sbjct: 98 NHIVYLGGKDGIYTYDYATKSAKNIGVTSLSIWQMFY-----CPIHGLFFTTSDEKP--- 149
Query: 656 QIIKNKQIDVIL 691
+ K+ Q++ I+
Sbjct: 150 YVFKDGQVNQIV 161
>sp|P15650|ACADL_RAT Acyl-CoA dehydrogenase, long-chain specific, mitochondrial
precursor (LCAD)
Length = 430
Score = 30.0 bits (66), Expect = 7.0
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Frame = -3
Query: 660 ICWSTGFCEECVQINPCKCTRRSDGRSIDLSR---------IADTPINFLGGDGYLWQY 511
IC + F + C+Q++ T+R D S +++ +A + GG GY+W+Y
Sbjct: 341 ICVTRAFVDSCLQLHE---TKRLDSASASMAKYWASELQNTVAYQCVQLHGGWGYMWEY 396
>sp|P51174|ACADL_MOUSE Acyl-CoA dehydrogenase, long-chain specific, mitochondrial
precursor (LCAD)
Length = 430
Score = 29.6 bits (65), Expect = 9.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Frame = -3
Query: 660 ICWSTGFCEECVQINPCKCTRRSDGRSIDLSR---------IADTPINFLGGDGYLWQY 511
IC + F + C+Q++ T+R D S +++ +A + GG GY+W+Y
Sbjct: 341 ICVTRAFVDSCLQLHE---TKRLDSGSASMAKYWASELQNSVAYECVQLHGGWGYMWEY 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,263,872
Number of Sequences: 369166
Number of extensions: 1380422
Number of successful extensions: 3859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3857
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)