Planaria EST Database

DrC_00055

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00055
         (853 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36776|LONM_HUMAN  Lon protease homolog, mitochondrial pr...   262   1e-69
sp|O44952|LONM_CAEEL  Lon protease homolog, mitochondrial pr...   224   2e-58
sp|P93648|LONH2_MAIZE  Lon protease homolog 2, mitochondrial...   221   2e-57
sp|Q9PK50|LON_CHLMU  ATP-dependent protease La                    219   6e-57
sp|O84348|LON_CHLTR  ATP-dependent protease La                    219   1e-56
sp|P93655|LONH2_ARATH  Lon protease homolog 2, mitochondrial...   213   7e-55
sp|Q9Z9F4|LON_CHLPN  ATP-dependent protease La                    211   3e-54
sp|P36775|LONM_YEAST  Lon protease homolog, mitochondrial pr...   197   4e-50
sp|Q09769|LONM_SCHPO  Putative Lon protease homolog, mitocho...   188   2e-47
sp|Q59185|LON1_BORBU  ATP-dependent protease La                   184   3e-46

>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial precursor (Lon protease-like
            protein) (LONP) (LONHs)
          Length = 959

 Score =  262 bits (669), Expect = 1e-69
 Identities = 141/255 (55%), Positives = 175/255 (68%)
 Frame = +3

Query: 3    KSAFKIVNQSTDGIINVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFI 182
            KSA+KIV+   + +  VT ENLQDFVGKP++T +R+Y  TP GVV GLAWT MGG+ LF+
Sbjct: 722  KSAYKIVSGEAESV-EVTPENLQDFVGKPVFTVERMYDVTPPGVVMGLAWTAMGGSTLFV 780

Query: 183  ETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKAN 362
            ET+ +R +D   K  KD       GS+ +TGQLG+VMKES  IA+TFA  F+        
Sbjct: 781  ETSLRRPQDKDAKGDKD-------GSLEVTGQLGEVMKESARIAYTFARAFLMQ------ 827

Query: 363  SESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVA 542
                        A  +L  + IH+HVP+GA PKDGPSAG T+VTAL+SL+M   V QN+A
Sbjct: 828  ---------HAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLA 878

Query: 543  MTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSH 722
            MTGEVSLTGK+LPVGGIKEK IAAKR+G+  I+LP ENKKD+ DL A I E L ++FV H
Sbjct: 879  MTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVHFVEH 938

Query: 723  YSEIFPITFPNNQFE 767
            Y EIF I FP+ Q E
Sbjct: 939  YREIFDIAFPDEQAE 953

>sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial precursor
          Length = 971

 Score =  224 bits (572), Expect = 2e-58
 Identities = 122/235 (51%), Positives = 156/235 (66%)
 Frame = +3

Query: 45   INVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFIETTCKRNRDDVLKP 224
            I V TENLQ FVG+P +T DR+Y  TP GV+ GLAWT MGG+ L+IET  KR  D     
Sbjct: 760  IVVCTENLQKFVGRPKFTSDRMYEVTPPGVIMGLAWTAMGGSALYIETVLKRPVDLT--- 816

Query: 225  LKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKANSESSSLQKTFTDAA 404
              DK+     GS+  TG LGDVMKESV  A T A       G  A  +  +         
Sbjct: 817  -NDKD-----GSIETTGNLGDVMKESVRTALTVAK------GILAREQPDN--------- 855

Query: 405  RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 584
            +F   A IHIHVP+GA PKDGPSAG+T+V++L+SL+++  V Q++AMTGE+SLTGKVLPV
Sbjct: 856  KFFDKAHIHIHVPEGATPKDGPSAGVTLVSSLLSLALDRPVVQDMAMTGEISLTGKVLPV 915

Query: 585  GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITF 749
            GGI+EK+IAA+R G   + LP EN++D+DDLP  +K +L I FVSHY E++   F
Sbjct: 916  GGIREKVIAARRVGAKRVFLPNENRRDFDDLPEFMKSELDIRFVSHYDELYEHLF 970

>sp|P93648|LONH2_MAIZE Lon protease homolog 2, mitochondrial precursor
          Length = 964

 Score =  221 bits (564), Expect = 2e-57
 Identities = 117/252 (46%), Positives = 162/252 (64%), Gaps = 7/252 (2%)
 Frame = +3

Query: 24   NQSTDGIIN-------VTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFI 182
            N+ TDG  +       V + NL DFVGKP++  +R+Y  TP GVV GLAWT MGG+ L+I
Sbjct: 735  NKGTDGAADKAIEKVVVDSSNLGDFVGKPVFQAERIYEHTPVGVVMGLAWTAMGGSTLYI 794

Query: 183  ETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKAN 362
            ET             K  E  E KG++VLTGQLGDVMKES  IAHT     +        
Sbjct: 795  ET-------------KKVEEREGKGALVLTGQLGDVMKESAQIAHTVGRAVL-------- 833

Query: 363  SESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVA 542
                 L+K   +   F  N+ +H+HVP G+ PKDGPSAG TM+T+++SL+M   V +++A
Sbjct: 834  -----LEKEPDN--HFFANSKVHLHVPAGSTPKDGPSAGCTMITSMLSLAMGKPVKKDLA 886

Query: 543  MTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSH 722
            MTGEV+LTG++LP+GG+KEK IAA+RS I ++I P  NK+D+D+L + +KE L ++FV  
Sbjct: 887  MTGEVTLTGRILPIGGVKEKTIAARRSAIKTLIFPAANKRDFDELASNVKEGLEVHFVDT 946

Query: 723  YSEIFPITFPNN 758
            YSEI+ + F ++
Sbjct: 947  YSEIYDLAFQSD 958

>sp|Q9PK50|LON_CHLMU ATP-dependent protease La
          Length = 819

 Score =  219 bits (559), Expect = 6e-57
 Identities = 116/255 (45%), Positives = 160/255 (62%), Gaps = 5/255 (1%)
 Frame = +3

Query: 3    KSAFKIV-----NQSTDGIINVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGG 167
            K A KIV     N S      +T +NLQD++GKPI++ DR Y  TP GV TGLAWT +GG
Sbjct: 591  KVALKIVQNQEKNPSKKSRFTITPKNLQDYLGKPIFSSDRFYEKTPVGVATGLAWTSLGG 650

Query: 168  TVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNL 347
              L+IE+                 S   K  + LTGQ GDVMKES  IA T+        
Sbjct: 651  ATLYIESV-------------QVPSSSGKADMHLTGQAGDVMKESSQIAWTYL------- 690

Query: 348  GTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSV 527
                    S+L++ +     F   + +HIH+P+GA PKDGPSAGITMVT+L+SL ++  V
Sbjct: 691  -------HSALER-YAPGRPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDVPV 742

Query: 528  TQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSI 707
              N+ MTGE++LTG+VL +GGI+EK+IAA+RS +N +I P +N++DYD+LPA +K+ L +
Sbjct: 743  LNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNVLIFPEDNRRDYDELPAYLKKGLKV 802

Query: 708  YFVSHYSEIFPITFP 752
            +FV+HY ++F I FP
Sbjct: 803  HFVTHYDDVFKIAFP 817

>sp|O84348|LON_CHLTR ATP-dependent protease La
          Length = 819

 Score =  219 bits (557), Expect = 1e-56
 Identities = 115/255 (45%), Positives = 160/255 (62%), Gaps = 5/255 (1%)
 Frame = +3

Query: 3    KSAFKIV-----NQSTDGIINVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGG 167
            K A KIV     N S      +T +NLQD++GKP+++ DR Y  TP GV TGLAWT +GG
Sbjct: 591  KVALKIVQNQEKNLSKKSRFTITPKNLQDYLGKPVFSSDRFYEKTPVGVATGLAWTSLGG 650

Query: 168  TVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNL 347
              L+IE+                 S   K  + LTGQ GDVMKES  IA T+        
Sbjct: 651  ATLYIESV-------------QVPSSSGKADMHLTGQAGDVMKESSQIAWTYL------- 690

Query: 348  GTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSV 527
                    S+L++ +     F   + +HIH+P+GA PKDGPSAGITMVT+L+SL ++  V
Sbjct: 691  -------HSALER-YAPGQPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDVPV 742

Query: 528  TQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSI 707
              N+ MTGE++LTG+VL +GGI+EK+IAA+RS +N +I P +N++DYD+LPA +K+ L +
Sbjct: 743  LNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNILIFPEDNRRDYDELPAYLKKGLKV 802

Query: 708  YFVSHYSEIFPITFP 752
            +FV+HY ++F I FP
Sbjct: 803  HFVTHYDDVFKIAFP 817

>sp|P93655|LONH2_ARATH Lon protease homolog 2, mitochondrial precursor
          Length = 940

 Score =  213 bits (541), Expect = 7e-55
 Identities = 111/235 (47%), Positives = 152/235 (64%)
 Frame = +3

Query: 45   INVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFIETTCKRNRDDVLKP 224
            + +   NL D+VGKP++  ++LY  TP GVV GLAWT MGG+ L+IETT           
Sbjct: 727  VMIDESNLADYVGKPVFHAEKLYEQTPVGVVMGLAWTSMGGSTLYIETTVV--------- 777

Query: 225  LKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKANSESSSLQKTFTDAA 404
                E  E KG + +TGQLGDVMKES  IAHT A   M             L+K   +  
Sbjct: 778  ----EEGEGKGGLNITGQLGDVMKESAQIAHTVARKIM-------------LEKEPEN-- 818

Query: 405  RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 584
            +F  N+ +H+HVP GA PKDGPSAG TM+T+L+SL+    V +++AMTGEV+LTG++LP+
Sbjct: 819  QFFANSKLHLHVPAGATPKDGPSAGCTMITSLLSLATKKPVRKDLAMTGEVTLTGRILPI 878

Query: 585  GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITF 749
            GG+KEK IAA+RS I +II P  N++D+D+L   +KE L+++FV  Y +IF + F
Sbjct: 879  GGVKEKTIAARRSQIKTIIFPEANRRDFDELAENVKEGLNVHFVDDYGKIFELAF 933

>sp|Q9Z9F4|LON_CHLPN ATP-dependent protease La
          Length = 819

 Score =  211 bits (536), Expect = 3e-54
 Identities = 112/255 (43%), Positives = 158/255 (61%), Gaps = 5/255 (1%)
 Frame = +3

Query: 3    KSAFKIVN-----QSTDGIINVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGG 167
            K A KIV      +S      ++++NLQ ++GKPI++ DR Y  TP GV TGLAWT +GG
Sbjct: 592  KVALKIVQNQEKPKSKKITFKISSKNLQTYLGKPIFSSDRFYESTPVGVATGLAWTSLGG 651

Query: 168  TVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNL 347
              L+IE+                +   +K  + LTGQ G+VMKES  IA T+        
Sbjct: 652  ATLYIESV---------------QVSSLKTDMHLTGQAGEVMKESSQIAWTYL------- 689

Query: 348  GTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSV 527
                    S+L + +     F   + +HIH+P+GA PKDGPSAGITMVT+L+SL + T V
Sbjct: 690  -------HSALHR-YAPGYTFFPKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLETPV 741

Query: 528  TQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSI 707
              N+ MTGE++LTG+VL VGGI+EK+IAA+RS +N +I P +N++DY++LPA +K  L I
Sbjct: 742  VNNLGMTGEITLTGRVLGVGGIREKLIAARRSRLNILIFPEDNRRDYEELPAYLKTGLKI 801

Query: 708  YFVSHYSEIFPITFP 752
            +FVSHY ++  + FP
Sbjct: 802  HFVSHYDDVLKVAFP 816

>sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial precursor
          Length = 1133

 Score =  197 bits (500), Expect = 4e-50
 Identities = 102/235 (43%), Positives = 149/235 (63%)
 Frame = +3

Query: 45   INVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFIETTCKRNRDDVLKP 224
            ++++ +NL+D+VG P++T DRLY  TP GVV GLAWT MGG  L++E+  ++   +   P
Sbjct: 899  VSISQKNLKDYVGPPVYTTDRLYETTPPGVVMGLAWTNMGGCSLYVESVLEQPLHNCKHP 958

Query: 225  LKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKANSESSSLQKTFTDAA 404
              ++           TGQLGDVMKES  +A++FA  +++              + F +  
Sbjct: 959  TFER-----------TGQLGDVMKESSRLAYSFAKMYLA--------------QKFPEN- 992

Query: 405  RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 584
            RF   A IH+H P+GA PKDGPSAG+TM T+ +SL++N S+   VAMTGE++LTGKVL +
Sbjct: 993  RFFEKASIHLHCPEGATPKDGPSAGVTMATSFLSLALNKSIDPTVAMTGELTLTGKVLRI 1052

Query: 585  GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITF 749
            GG++EK +AAKRSG  +II P +N  D+++LP  +KE L       Y++IF   F
Sbjct: 1053 GGLREKAVAAKRSGAKTIIFPKDNLNDWEELPDNVKEGLEPLAADWYNDIFQKLF 1107

>sp|Q09769|LONM_SCHPO Putative Lon protease homolog, mitochondrial precursor
          Length = 1067

 Score =  188 bits (477), Expect = 2e-47
 Identities = 103/247 (41%), Positives = 151/247 (61%)
 Frame = +3

Query: 45   INVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFIETTCKRNRDDVLKP 224
            I +  ++L  ++G PI+T  RLY  TP GVV GL WTPMGG  +++ET  K    ++L  
Sbjct: 830  IEIEEKDLTKYLGPPIYTSQRLYDTTPPGVVMGLGWTPMGGVSMYVETIVK----NIL-- 883

Query: 225  LKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKANSESSSLQKTFTDAA 404
                 S     S+  TGQLGDVMKES  I+++F+ +F+S              K F +  
Sbjct: 884  -----SSNSTPSLERTGQLGDVMKESSEISYSFSKSFLS--------------KHFPNN- 923

Query: 405  RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 584
            +F  +A +H+H P+G++ KDGPSAGITM T+L+SL+++T V    AMTGE++LTGK+L +
Sbjct: 924  KFFEHARLHMHCPEGSISKDGPSAGITMATSLLSLALDTPVPATTAMTGELTLTGKILRI 983

Query: 585  GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFPNNQF 764
            GG++EK +AAK SG+  I+ P  N  D++ LP  +KE L+   V+ Y ++F   F N   
Sbjct: 984  GGLREKTVAAKLSGMKEILFPKSNLADWEQLPDYVKEGLTGVPVAWYDDVFKRVFSNIDA 1043

Query: 765  EKAT*LF 785
            EK   L+
Sbjct: 1044 EKCNNLW 1050

>sp|Q59185|LON1_BORBU ATP-dependent protease La
          Length = 806

 Score =  184 bits (467), Expect = 3e-46
 Identities = 100/249 (40%), Positives = 152/249 (61%)
 Frame = +3

Query: 3    KSAFKIVNQSTDGIINVTTENLQDFVGKPIWTRDRLYPDTPEGVVTGLAWTPMGGTVLFI 182
            K A K++  +      ++ +NL+++VG P++ ++ +      G+V GLAWT  GG+ L I
Sbjct: 588  KVARKLIENTEVKSYQISNDNLEEYVGVPVFRKESMPNAMYSGMVMGLAWTNYGGSTLMI 647

Query: 183  ETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMSNLGTKAN 362
            ET                ++E   G + LTG+LGDVMKES +IA+T+  +   +L     
Sbjct: 648  ETV---------------KTESKVGGIKLTGRLGDVMKESANIAYTYVNSIKGDL----- 687

Query: 363  SESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVA 542
                S+ K+F     F +N  IH+H+P+GA PKDGPSAGIT+ +A ISL++N  V  ++A
Sbjct: 688  ----SISKSF-----FEKNI-IHLHIPEGATPKDGPSAGITIASAFISLALNKVVRPHLA 737

Query: 543  MTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSH 722
            MTGE+SLTG V+ +GG+KEKIIAAKRSG+  II+P  N+ D +++P  IK  ++ Y V +
Sbjct: 738  MTGELSLTGNVMMIGGLKEKIIAAKRSGVEHIIVPKANRVDLEEIPTNIKSGINFYLVDN 797

Query: 723  YSEIFPITF 749
              E+  + F
Sbjct: 798  MREVIKLLF 806

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,466,884
Number of Sequences: 369166
Number of extensions: 2039908
Number of successful extensions: 5473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5383
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00055

  1. Dr_sW_027_C06
  2. Dr_sW_002_E04
  3. Dr_sW_005_B15