Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_C06
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial pr... 202 5e-52
sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial pr... 177 2e-44
sp|P93648|LONH2_MAIZE Lon protease homolog 2, mitochondrial... 176 6e-44
sp|P93655|LONH2_ARATH Lon protease homolog 2, mitochondrial... 171 2e-42
sp|O84348|LON_CHLTR ATP-dependent protease La 168 1e-41
sp|Q9PK50|LON_CHLMU ATP-dependent protease La 168 1e-41
sp|Q9Z9F4|LON_CHLPN ATP-dependent protease La 164 1e-40
sp|Q59185|LON1_BORBU ATP-dependent protease La 154 2e-37
sp|Q09769|LONM_SCHPO Putative Lon protease homolog, mitocho... 150 4e-36
sp|O51558|LON2_BORBU ATP-dependent protease La homolog 149 5e-36
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial precursor (Lon protease-like
protein) (LONP) (LONHs)
Length = 959
Score = 202 bits (515), Expect = 5e-52
Identities = 110/203 (54%), Positives = 136/203 (66%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
MGG+ LF+ET+ +R +D K KD GS+ +TGQLG+VMKES IA+TFA F+
Sbjct: 773 MGGSTLFVETSLRRPQDKDAKGDKD-------GSLEVTGQLGEVMKESARIAYTFARAFL 825
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
A +L + IH+HVP+GA PKDGPSAG T+VTAL+SL+M
Sbjct: 826 MQ---------------HAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMG 870
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
V QN+AMTGEVSLTGK+LPVGGIKEK IAAKR+G+ I+LP ENKKD+ DL A I E
Sbjct: 871 RPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEG 930
Query: 545 LSIYFVSHYSEIFPITFPNNQFE 613
L ++FV HY EIF I FP+ Q E
Sbjct: 931 LEVHFVEHYREIFDIAFPDEQAE 953
>sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial precursor
Length = 971
Score = 177 bits (449), Expect = 2e-44
Identities = 98/197 (49%), Positives = 128/197 (64%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
MGG+ L+IET KR D DK+ GS+ TG LGDVMKESV A T A
Sbjct: 798 MGGSALYIETVLKRPVDLT----NDKD-----GSIETTGNLGDVMKESVRTALTVAK--- 845
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
G A + + +F A IHIHVP+GA PKDGPSAG+T+V++L+SL+++
Sbjct: 846 ---GILAREQPDN---------KFFDKAHIHIHVPEGATPKDGPSAGVTLVSSLLSLALD 893
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
V Q++AMTGE+SLTGKVLPVGGI+EK+IAA+R G + LP EN++D+DDLP +K +
Sbjct: 894 RPVVQDMAMTGEISLTGKVLPVGGIREKVIAARRVGAKRVFLPNENRRDFDDLPEFMKSE 953
Query: 545 LSIYFVSHYSEIFPITF 595
L I FVSHY E++ F
Sbjct: 954 LDIRFVSHYDELYEHLF 970
>sp|P93648|LONH2_MAIZE Lon protease homolog 2, mitochondrial precursor
Length = 964
Score = 176 bits (445), Expect = 6e-44
Identities = 92/200 (46%), Positives = 130/200 (65%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
MGG+ L+IET K E E KG++VLTGQLGDVMKES IAHT +
Sbjct: 787 MGGSTLYIET-------------KKVEEREGKGALVLTGQLGDVMKESAQIAHTVGRAVL 833
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
L+K + F N+ +H+HVP G+ PKDGPSAG TM+T+++SL+M
Sbjct: 834 -------------LEKEPDN--HFFANSKVHLHVPAGSTPKDGPSAGCTMITSMLSLAMG 878
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
V +++AMTGEV+LTG++LP+GG+KEK IAA+RS I ++I P NK+D+D+L + +KE
Sbjct: 879 KPVKKDLAMTGEVTLTGRILPIGGVKEKTIAARRSAIKTLIFPAANKRDFDELASNVKEG 938
Query: 545 LSIYFVSHYSEIFPITFPNN 604
L ++FV YSEI+ + F ++
Sbjct: 939 LEVHFVDTYSEIYDLAFQSD 958
>sp|P93655|LONH2_ARATH Lon protease homolog 2, mitochondrial precursor
Length = 940
Score = 171 bits (432), Expect = 2e-42
Identities = 92/197 (46%), Positives = 126/197 (63%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
MGG+ L+IETT E E KG + +TGQLGDVMKES IAHT A M
Sbjct: 765 MGGSTLYIETTVV-------------EEGEGKGGLNITGQLGDVMKESAQIAHTVARKIM 811
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
L+K + +F N+ +H+HVP GA PKDGPSAG TM+T+L+SL+
Sbjct: 812 -------------LEKEPEN--QFFANSKLHLHVPAGATPKDGPSAGCTMITSLLSLATK 856
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
V +++AMTGEV+LTG++LP+GG+KEK IAA+RS I +II P N++D+D+L +KE
Sbjct: 857 KPVRKDLAMTGEVTLTGRILPIGGVKEKTIAARRSQIKTIIFPEANRRDFDELAENVKEG 916
Query: 545 LSIYFVSHYSEIFPITF 595
L+++FV Y +IF + F
Sbjct: 917 LNVHFVDDYGKIFELAF 933
>sp|O84348|LON_CHLTR ATP-dependent protease La
Length = 819
Score = 168 bits (425), Expect = 1e-41
Identities = 87/198 (43%), Positives = 125/198 (63%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
+GG L+IE+ S K + LTGQ GDVMKES IA T+
Sbjct: 648 LGGATLYIESV-------------QVPSSSGKADMHLTGQAGDVMKESSQIAWTYL---- 690
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
S+L++ + F + +HIH+P+GA PKDGPSAGITMVT+L+SL ++
Sbjct: 691 ----------HSALER-YAPGQPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLD 739
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
V N+ MTGE++LTG+VL +GGI+EK+IAA+RS +N +I P +N++DYD+LPA +K+
Sbjct: 740 VPVLNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNILIFPEDNRRDYDELPAYLKKG 799
Query: 545 LSIYFVSHYSEIFPITFP 598
L ++FV+HY ++F I FP
Sbjct: 800 LKVHFVTHYDDVFKIAFP 817
>sp|Q9PK50|LON_CHLMU ATP-dependent protease La
Length = 819
Score = 168 bits (425), Expect = 1e-41
Identities = 87/198 (43%), Positives = 125/198 (63%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
+GG L+IE+ S K + LTGQ GDVMKES IA T+
Sbjct: 648 LGGATLYIESV-------------QVPSSSGKADMHLTGQAGDVMKESSQIAWTYL---- 690
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
S+L++ + F + +HIH+P+GA PKDGPSAGITMVT+L+SL ++
Sbjct: 691 ----------HSALER-YAPGRPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLD 739
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
V N+ MTGE++LTG+VL +GGI+EK+IAA+RS +N +I P +N++DYD+LPA +K+
Sbjct: 740 VPVLNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNVLIFPEDNRRDYDELPAYLKKG 799
Query: 545 LSIYFVSHYSEIFPITFP 598
L ++FV+HY ++F I FP
Sbjct: 800 LKVHFVTHYDDVFKIAFP 817
>sp|Q9Z9F4|LON_CHLPN ATP-dependent protease La
Length = 819
Score = 164 bits (416), Expect = 1e-40
Identities = 86/198 (43%), Positives = 123/198 (62%)
Frame = +2
Query: 5 MGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFM 184
+GG L+IE+ + +K + LTGQ G+VMKES IA T+
Sbjct: 649 LGGATLYIESV---------------QVSSLKTDMHLTGQAGEVMKESSQIAWTYL---- 689
Query: 185 SNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMN 364
S+L + + F + +HIH+P+GA PKDGPSAGITMVT+L+SL +
Sbjct: 690 ----------HSALHR-YAPGYTFFPKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLE 738
Query: 365 TSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKED 544
T V N+ MTGE++LTG+VL VGGI+EK+IAA+RS +N +I P +N++DY++LPA +K
Sbjct: 739 TPVVNNLGMTGEITLTGRVLGVGGIREKLIAARRSRLNILIFPEDNRRDYEELPAYLKTG 798
Query: 545 LSIYFVSHYSEIFPITFP 598
L I+FVSHY ++ + FP
Sbjct: 799 LKIHFVSHYDDVLKVAFP 816
>sp|Q59185|LON1_BORBU ATP-dependent protease La
Length = 806
Score = 154 bits (389), Expect = 2e-37
Identities = 85/196 (43%), Positives = 122/196 (62%)
Frame = +2
Query: 8 GGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMS 187
GG+ L IET ++E G + LTG+LGDVMKES +IA+T+ +
Sbjct: 641 GGSTLMIETV---------------KTESKVGGIKLTGRLGDVMKESANIAYTYVNSIKG 685
Query: 188 NLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNT 367
+L S+ K+F F +N IH+H+P+GA PKDGPSAGIT+ +A ISL++N
Sbjct: 686 DL---------SISKSF-----FEKNI-IHLHIPEGATPKDGPSAGITIASAFISLALNK 730
Query: 368 SVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDL 547
V ++AMTGE+SLTG V+ +GG+KEKIIAAKRSG+ II+P N+ D +++P IK +
Sbjct: 731 VVRPHLAMTGELSLTGNVMMIGGLKEKIIAAKRSGVEHIIVPKANRVDLEEIPTNIKSGI 790
Query: 548 SIYFVSHYSEIFPITF 595
+ Y V + E+ + F
Sbjct: 791 NFYLVDNMREVIKLLF 806
>sp|Q09769|LONM_SCHPO Putative Lon protease homolog, mitochondrial precursor
Length = 1067
Score = 150 bits (378), Expect = 4e-36
Identities = 85/210 (40%), Positives = 127/210 (60%)
Frame = +2
Query: 2 PMGGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNF 181
PMGG +++ET K ++L S S+ TGQLGDVMKES I+++F+ +F
Sbjct: 867 PMGGVSMYVETIVK----NIL-------SSNSTPSLERTGQLGDVMKESSEISYSFSKSF 915
Query: 182 MSNLGTKANSESSSLQKTFTDAARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSM 361
+S K F + +F +A +H+H P+G++ KDGPSAGITM T+L+SL++
Sbjct: 916 LS--------------KHFPNN-KFFEHARLHMHCPEGSISKDGPSAGITMATSLLSLAL 960
Query: 362 NTSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKE 541
+T V AMTGE++LTGK+L +GG++EK +AAK SG+ I+ P N D++ LP +KE
Sbjct: 961 DTPVPATTAMTGELTLTGKILRIGGLREKTVAAKLSGMKEILFPKSNLADWEQLPDYVKE 1020
Query: 542 DLSIYFVSHYSEIFPITFPNNQFEKAT*LF 631
L+ V+ Y ++F F N EK L+
Sbjct: 1021 GLTGVPVAWYDDVFKRVFSNIDAEKCNNLW 1050
>sp|O51558|LON2_BORBU ATP-dependent protease La homolog
Length = 813
Score = 149 bits (377), Expect = 5e-36
Identities = 84/194 (43%), Positives = 117/194 (60%), Gaps = 2/194 (1%)
Frame = +2
Query: 8 GGTVLFIETTCKRNRDDVLKPLKDKESEEMKGSVVLTGQLGDVMKESVSIAHTFAMNFMS 187
GGTVL +E T E KG ++LTG LG +MKES +A+
Sbjct: 649 GGTVLPVEAT----------------KFEKKGDIILTGSLGAIMKESAQLAY-------- 684
Query: 188 NLGTKANSESSSLQKTFTDAARF-LRNAP-IHIHVPDGAVPKDGPSAGITMVTALISLSM 361
S+ KT++ F ++ +P IH+H P+GA PKDGPSAGIT+ TA+ S+
Sbjct: 685 -----------SIVKTYSSKLNFDVKESPEIHLHFPEGATPKDGPSAGITIATAIASILS 733
Query: 362 NTSVTQNVAMTGEVSLTGKVLPVGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKE 541
+ V ++AMTGEV+L G VLPVGGIKEK++AA R+GI+ +ILP +NKKDY LP +K+
Sbjct: 734 DKKVPLDLAMTGEVTLKGFVLPVGGIKEKVLAAYRNGISKVILPKDNKKDYSKLPEEVKD 793
Query: 542 DLSIYFVSHYSEIF 583
++ + FVS E+F
Sbjct: 794 NIDVKFVSSLEEVF 807
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,428,340
Number of Sequences: 369166
Number of extensions: 1567488
Number of successful extensions: 4199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4146
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)