Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_B15
(469 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial pr... 164 1e-40
sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial pr... 150 1e-36
sp|O84348|LON_CHLTR ATP-dependent protease La 150 2e-36
sp|Q9PK50|LON_CHLMU ATP-dependent protease La 150 2e-36
sp|Q9Z9F4|LON_CHLPN ATP-dependent protease La 149 4e-36
sp|P93648|LONH2_MAIZE Lon protease homolog 2, mitochondrial... 142 4e-34
sp|P93655|LONH2_ARATH Lon protease homolog 2, mitochondrial... 138 7e-33
sp|P43864|LON_HAEIN ATP-dependent protease La 130 2e-30
sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial pr... 129 3e-30
sp|P36772|LON_BRECH ATP-dependent protease La 127 1e-29
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial precursor (Lon protease-like
protein) (LONP) (LONHs)
Length = 959
Score = 164 bits (414), Expect = 1e-40
Identities = 79/120 (65%), Positives = 95/120 (79%)
Frame = +3
Query: 24 FLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPVG 203
+L + IH+HVP+GA PKDGPSAG T+VTAL+SL+M V QN+AMTGEVSLTGK+LPVG
Sbjct: 834 YLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVG 893
Query: 204 GIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFPNNQFE 383
GIKEK IAAKR+G+ I+LP ENKKD+ DL A I E L ++FV HY EIF I FP+ Q E
Sbjct: 894 GIKEKTIAAKRAGVTCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFPDEQAE 953
>sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial precursor
Length = 971
Score = 150 bits (380), Expect = 1e-36
Identities = 68/115 (59%), Positives = 92/115 (80%)
Frame = +3
Query: 21 RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 200
+F A IHIHVP+GA PKDGPSAG+T+V++L+SL+++ V Q++AMTGE+SLTGKVLPV
Sbjct: 856 KFFDKAHIHIHVPEGATPKDGPSAGVTLVSSLLSLALDRPVVQDMAMTGEISLTGKVLPV 915
Query: 201 GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITF 365
GGI+EK+IAA+R G + LP EN++D+DDLP +K +L I FVSHY E++ F
Sbjct: 916 GGIREKVIAARRVGAKRVFLPNENRRDFDDLPEFMKSELDIRFVSHYDELYEHLF 970
>sp|O84348|LON_CHLTR ATP-dependent protease La
Length = 819
Score = 150 bits (378), Expect = 2e-36
Identities = 64/115 (55%), Positives = 93/115 (80%)
Frame = +3
Query: 24 FLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPVG 203
F + +HIH+P+GA PKDGPSAGITMVT+L+SL ++ V N+ MTGE++LTG+VL +G
Sbjct: 703 FFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDVPVLNNLGMTGELTLTGRVLGIG 762
Query: 204 GIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFP 368
GI+EK+IAA+RS +N +I P +N++DYD+LPA +K+ L ++FV+HY ++F I FP
Sbjct: 763 GIREKLIAARRSKLNILIFPEDNRRDYDELPAYLKKGLKVHFVTHYDDVFKIAFP 817
>sp|Q9PK50|LON_CHLMU ATP-dependent protease La
Length = 819
Score = 150 bits (378), Expect = 2e-36
Identities = 64/115 (55%), Positives = 93/115 (80%)
Frame = +3
Query: 24 FLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPVG 203
F + +HIH+P+GA PKDGPSAGITMVT+L+SL ++ V N+ MTGE++LTG+VL +G
Sbjct: 703 FFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDVPVLNNLGMTGELTLTGRVLGIG 762
Query: 204 GIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFP 368
GI+EK+IAA+RS +N +I P +N++DYD+LPA +K+ L ++FV+HY ++F I FP
Sbjct: 763 GIREKLIAARRSKLNVLIFPEDNRRDYDELPAYLKKGLKVHFVTHYDDVFKIAFP 817
>sp|Q9Z9F4|LON_CHLPN ATP-dependent protease La
Length = 819
Score = 149 bits (375), Expect = 4e-36
Identities = 65/115 (56%), Positives = 91/115 (79%)
Frame = +3
Query: 24 FLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPVG 203
F + +HIH+P+GA PKDGPSAGITMVT+L+SL + T V N+ MTGE++LTG+VL VG
Sbjct: 702 FFPKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLETPVVNNLGMTGEITLTGRVLGVG 761
Query: 204 GIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFP 368
GI+EK+IAA+RS +N +I P +N++DY++LPA +K L I+FVSHY ++ + FP
Sbjct: 762 GIREKLIAARRSRLNILIFPEDNRRDYEELPAYLKTGLKIHFVSHYDDVLKVAFP 816
>sp|P93648|LONH2_MAIZE Lon protease homolog 2, mitochondrial precursor
Length = 964
Score = 142 bits (358), Expect = 4e-34
Identities = 61/117 (52%), Positives = 92/117 (78%)
Frame = +3
Query: 24 FLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPVG 203
F N+ +H+HVP G+ PKDGPSAG TM+T+++SL+M V +++AMTGEV+LTG++LP+G
Sbjct: 842 FFANSKVHLHVPAGSTPKDGPSAGCTMITSMLSLAMGKPVKKDLAMTGEVTLTGRILPIG 901
Query: 204 GIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFPNN 374
G+KEK IAA+RS I ++I P NK+D+D+L + +KE L ++FV YSEI+ + F ++
Sbjct: 902 GVKEKTIAARRSAIKTLIFPAANKRDFDELASNVKEGLEVHFVDTYSEIYDLAFQSD 958
>sp|P93655|LONH2_ARATH Lon protease homolog 2, mitochondrial precursor
Length = 940
Score = 138 bits (347), Expect = 7e-33
Identities = 61/115 (53%), Positives = 89/115 (77%)
Frame = +3
Query: 21 RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 200
+F N+ +H+HVP GA PKDGPSAG TM+T+L+SL+ V +++AMTGEV+LTG++LP+
Sbjct: 819 QFFANSKLHLHVPAGATPKDGPSAGCTMITSLLSLATKKPVRKDLAMTGEVTLTGRILPI 878
Query: 201 GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITF 365
GG+KEK IAA+RS I +II P N++D+D+L +KE L+++FV Y +IF + F
Sbjct: 879 GGVKEKTIAARRSQIKTIIFPEANRRDFDELAENVKEGLNVHFVDDYGKIFELAF 933
>sp|P43864|LON_HAEIN ATP-dependent protease La
Length = 803
Score = 130 bits (326), Expect = 2e-30
Identities = 62/118 (52%), Positives = 81/118 (68%)
Frame = +3
Query: 18 ARFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLP 197
A F IHIHVPDGA PKDGPSAGI M TALIS V +VAMTGE+SL GKVLP
Sbjct: 656 AEFHEKRDIHIHVPDGATPKDGPSAGIAMCTALISCLTGNPVRADVAMTGEISLRGKVLP 715
Query: 198 VGGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITFPN 371
+GG+KEK++AA R GI ++++P EN KD +++P +K++L+I+ V E+ N
Sbjct: 716 IGGLKEKLLAAHRGGIKTVLIPKENVKDLEEIPENVKQNLAIHAVETIDEVLGFALEN 773
>sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial precursor
Length = 1133
Score = 129 bits (325), Expect = 3e-30
Identities = 60/115 (52%), Positives = 82/115 (71%)
Frame = +3
Query: 21 RFLRNAPIHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPV 200
RF A IH+H P+GA PKDGPSAG+TM T+ +SL++N S+ VAMTGE++LTGKVL +
Sbjct: 993 RFFEKASIHLHCPEGATPKDGPSAGVTMATSFLSLALNKSIDPTVAMTGELTLTGKVLRI 1052
Query: 201 GGIKEKIIAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEIFPITF 365
GG++EK +AAKRSG +II P +N D+++LP +KE L Y++IF F
Sbjct: 1053 GGLREKAVAAKRSGAKTIIFPKDNLNDWEELPDNVKEGLEPLAADWYNDIFQKLF 1107
>sp|P36772|LON_BRECH ATP-dependent protease La
Length = 779
Score = 127 bits (320), Expect = 1e-29
Identities = 57/103 (55%), Positives = 79/103 (76%)
Frame = +3
Query: 42 IHIHVPDGAVPKDGPSAGITMVTALISLSMNTSVTQNVAMTGEVSLTGKVLPVGGIKEKI 221
IHIHVP+GA+PKDGPSAGITM TAL+S V + V MTGE++L G+VLP+GG+KEK
Sbjct: 663 IHIHVPEGAIPKDGPSAGITMATALVSALTGIPVKKEVGMTGEITLRGRVLPIGGLKEKC 722
Query: 222 IAAKRSGINSIILPTENKKDYDDLPAMIKEDLSIYFVSHYSEI 350
++A R+G+ +IILP +N+KD +D+P ++E L+ Y V H E+
Sbjct: 723 MSAHRAGLTTIILPKDNEKDIEDIPESVREALTFYPVEHLDEV 765
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,734,160
Number of Sequences: 369166
Number of extensions: 1123081
Number of successful extensions: 2767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2764
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)