Planaria EST Database


DrC_00042

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00042
         (692 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24534|EF1B_HUMAN  Elongation factor 1-beta (EF-1-beta)        253   3e-67
sp|P34826|EF1B_RABIT  Elongation factor 1-beta (EF-1-beta)        253   3e-67
sp|Q5E983|EF1B_BOVIN  Elongation factor 1-beta (EF-1-beta)        249   5e-66
sp|O70251|EF1B_MOUSE  Elongation factor 1-beta (EF-1-beta)        248   1e-65
sp|Q9YGQ1|EF1B_CHICK  Elongation factor 1-beta (EF-1-beta)        247   2e-65
sp|Q6DET9|EF1B_XENTR  Elongation factor 1-beta (EF-1-beta)        239   4e-63
sp|P30151|EF1B_XENLA  Elongation factor 1-beta (EF-1-beta) (...   236   4e-62
sp|O96827|EF1B_DROME  Probable elongation factor 1-beta (EF-...   230   2e-60
sp|P12262|EF1B_ARTSA  Elongation factor 1-beta (EF-1-beta)        228   9e-60
sp|P29522|EF1B2_BOMMO  Elongation factor 1-beta'                  222   6e-58
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  253 bits (647), Expect = 3e-67
 Identities = 136/225 (60%), Positives = 156/225 (69%), Gaps = 17/225 (7%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG+LK   G   LNDYL DKSYI GY PS AD+ VF    S      CHALRW+NHIK
Sbjct: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIK 60

Query: 197 SFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQ 328
           S+ + +      KKA     P          A        +DLFGSDDEE+ EEA R+++
Sbjct: 61  SYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120

Query: 329 ERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPV 508
           ERL  Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK  PV
Sbjct: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180

Query: 509 GYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           GYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  253 bits (646), Expect = 3e-67
 Identities = 136/225 (60%), Positives = 156/225 (69%), Gaps = 17/225 (7%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG+LK   G   LNDYL DKSYI GY PS AD+ VF           CHALRW+NHIK
Sbjct: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIK 60

Query: 197 SFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQ 328
           S+ + +      KKA     P          A        +DLFGSDDEE+ EEA R+++
Sbjct: 61  SYEKEKASLPGIKKALGTYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120

Query: 329 ERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPV 508
           ERL  Y +KK+ KPALVAKSSI LDVKPWDDETDMV+LE+CVRSI ADGL+WG+SK  PV
Sbjct: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPV 180

Query: 509 GYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           GYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  249 bits (636), Expect = 5e-66
 Identities = 133/225 (59%), Positives = 155/225 (68%), Gaps = 17/225 (7%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG+LK   G   LNDYL DKSYI GY PS AD+ VF           CHALRW+NHIK
Sbjct: 1   MGFGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIK 60

Query: 197 SFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQ 328
           S+ + +      KKA     P          A        +DLFGSDDEE+ EEA R+++
Sbjct: 61  SYEKEKASLPGVKKALGKYGPANVEDTTESGATDSKDDDDIDLFGSDDEEESEEAKRLRE 120

Query: 329 ERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPV 508
           ERL  Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK  PV
Sbjct: 121 ERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPV 180

Query: 509 GYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           GYGI+KL I CVVEDDKVGTD LEE+IT F++YVQSMDV +FNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFDEYVQSMDVAAFNKI 225
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  248 bits (633), Expect = 1e-65
 Identities = 132/225 (58%), Positives = 155/225 (68%), Gaps = 17/225 (7%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG+LK   G   LNDYL DKSYI GY PS AD+ VF           CHALRW+NHIK
Sbjct: 1   MGFGDLKTPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIK 60

Query: 197 SFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQ 328
           S+ + +      KK+     P          A        +DLFGSDDEE+ EEA ++++
Sbjct: 61  SYEKEKASLPGVKKSLGKYGPSSVEDTTGSGAADAKDDDDIDLFGSDDEEESEEAKKLRE 120

Query: 329 ERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPV 508
           ERL  Y +KK+ KPA+VAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK  PV
Sbjct: 121 ERLAQYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPV 180

Query: 509 GYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           GYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 181 GYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  247 bits (631), Expect = 2e-65
 Identities = 135/226 (59%), Positives = 157/226 (69%), Gaps = 18/226 (7%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFH--GCESIKDCYCHALRWFNHI 193
           M FG+LK   G   LND+L DKSYI GY PS AD+ VF   G     D + HALRW+NHI
Sbjct: 1   MGFGDLKSAAGLRVLNDFLADKSYIEGYVPSQADIAVFEAVGAPPPADLF-HALRWYNHI 59

Query: 194 KSFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIK 325
           KS+ + +      KKA     P          A        +DLFGSDDEE+ EEA R++
Sbjct: 60  KSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLR 119

Query: 326 QERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAP 505
           +ERL  Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK  P
Sbjct: 120 EERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVP 179

Query: 506 VGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           VGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 180 VGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta)
          Length = 228

 Score =  239 bits (611), Expect = 4e-63
 Identities = 129/228 (56%), Positives = 153/228 (67%), Gaps = 20/228 (8%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG+LK   G   LN++L DKSYI GY PS AD+ VF            HALRW+NHIK
Sbjct: 1   MGFGDLKSPAGLKVLNEFLADKSYIEGYVPSQADVAVFDALSGAPPADLFHALRWYNHIK 60

Query: 197 SFSEAE------KKAFRHVEPV------------AQXXXXXXXVDLFGSDDEED-EEAAR 319
           S+ + +      KK   +  PV             +       +DLFGSDDEE+ EE+ R
Sbjct: 61  SYEKQKSSLPGVKKPLGNYGPVNIEDTTGSTAKDTKEEDDDDDIDLFGSDDEEENEESKR 120

Query: 320 IKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKF 499
           +++ERL  Y AKKS KPAL+AKSSI LDVKPWDDETDM +LE+CVRSI  +GL+WGASK 
Sbjct: 121 VREERLAQYEAKKSKKPALIAKSSILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKL 180

Query: 500 APVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
            PVGYGI+KL I CVVEDDKVGTD LEE IT FED+VQSMDV +FNKI
Sbjct: 181 VPVGYGIKKLQIQCVVEDDKVGTDVLEENITAFEDFVQSMDVAAFNKI 228
>sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (p30)
          Length = 227

 Score =  236 bits (602), Expect = 4e-62
 Identities = 128/227 (56%), Positives = 152/227 (66%), Gaps = 19/227 (8%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG+LK   G   L ++L DKSYI GY PS AD+ VF    +       HALRW+NHIK
Sbjct: 1   MGFGDLKSPAGLKVLKEFLADKSYIEGYVPSQADVAVFDALSAAPPADLFHALRWYNHIK 60

Query: 197 SFSEAE------KKAFRHVEPV-----------AQXXXXXXXVDLFGSDDEED-EEAARI 322
           S+ + +      KKA  +  PV                    +DLFGSDDEE+ E+A R+
Sbjct: 61  SYEKQKSSLPGVKKALGNYGPVNIEDTTGSAAKETKEEDDDDIDLFGSDDEEESEDAKRV 120

Query: 323 KQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFA 502
           + ERL  Y AKKS KP L+AKSSI LDVKPWDDETDM +LE+C+RSI  DGLLWG+SK  
Sbjct: 121 RDERLAQYEAKKSKKPTLIAKSSILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLV 180

Query: 503 PVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           PVGYGI+KL I CVVEDDKVGTD LEE+IT FED+VQSMDV +FNKI
Sbjct: 181 PVGYGIKKLQIQCVVEDDKVGTDVLEEKITAFEDFVQSMDVAAFNKI 227
>sp|O96827|EF1B_DROME Probable elongation factor 1-beta (EF-1-beta)
          Length = 222

 Score =  230 bits (587), Expect = 2e-60
 Identities = 124/223 (55%), Positives = 147/223 (65%), Gaps = 15/223 (6%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIK 196
           M FG++    G  +LN +L D SYI+GYTPS ADL VF            +  RW+ HI 
Sbjct: 1   MAFGDVTTPQGLKELNAFLADNSYISGYTPSKADLSVFDALGKAPSADNVNVARWYRHIA 60

Query: 197 SFSEAEKKAFRHVEPVAQXXXXXXXV--------------DLFGSDDEEDEEAARIKQER 334
           SF  AE+ A+    P+ Q       V              DLFGSDDEEDEEA RIKQER
Sbjct: 61  SFEAAERAAWSGT-PLPQLAGGKPTVAAAAKPAADDDDDVDLFGSDDEEDEEAERIKQER 119

Query: 335 LDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGY 514
           + AYAAKKS KPAL+AKSS+ LDVKPWDDETDM E+E  VR+I  DGLLWGASK  PVGY
Sbjct: 120 VAAYAAKKSKKPALIAKSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGY 179

Query: 515 GIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           GI KL I CV+EDDKV  D L+E+I +FED+VQS+D+ +FNKI
Sbjct: 180 GINKLQIMCVIEDDKVSIDLLQEKIEEFEDFVQSVDIAAFNKI 222
>sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta)
          Length = 207

 Score =  228 bits (582), Expect = 9e-60
 Identities = 114/205 (55%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
 Frame = +2

Query: 32  NLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESI-KDCYCHALRWFNHIKSFSE 208
           +LK + GQ +LN+ L +KSY+ GY PS  D+  F+       D + + LRW+ HI SFS+
Sbjct: 5   DLKAEKGQEQLNELLANKSYLQGYEPSQEDVAAFNQLNKAPSDKFPYLLRWYKHISSFSD 64

Query: 209 AEKKAFRHVEPVAQXXXXXXXVDLFGSDDEEDEEAARIKQERLDAYAAKKSTKPALVAKS 388
           AEKK F  + P +        VDLFGSD EEDEEA +IK ER+ AY+ KKS KPA+VAKS
Sbjct: 65  AEKKGFPGI-PTSASKEEDDDVDLFGSD-EEDEEAEKIKAERMKAYSDKKSKKPAIVAKS 122

Query: 389 SITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGT 568
           S+ LD+KPWDDETDM E+EK VRS+  DGL+WGA+K  P+ YGI+KL I CVVEDDKV  
Sbjct: 123 SVILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSI 182

Query: 569 DFLEEEITKFEDYVQSMDVVSFNKI 643
           D L+E+I++FED+VQS+D+ +FNK+
Sbjct: 183 DELQEKISEFEDFVQSVDIAAFNKV 207
>sp|P29522|EF1B2_BOMMO Elongation factor 1-beta'
          Length = 222

 Score =  222 bits (566), Expect = 6e-58
 Identities = 120/222 (54%), Positives = 148/222 (66%), Gaps = 14/222 (6%)
 Frame = +2

Query: 20  MEFGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDCYC-HALRWFNHIK 196
           M  G++K   G + LN YL +KSY++GYTPS AD++VF            H LRW+N I 
Sbjct: 1   MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 60

Query: 197 SFSEAEKKAFRH--------VEPVAQXXXXXXX----VDLFGS-DDEEDEEAARIKQERL 337
           S++ AE+K +           +P A            VDLFGS D+EED EA RI++ERL
Sbjct: 61  SYTSAERKTWSQGTSPLTAGAKPTAPAPAAKDDDDDDVDLFGSGDEEEDAEAERIREERL 120

Query: 338 DAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYG 517
            AYA KKS KPAL+AKSSI LDVKPWDDETDM E+E  VR+I  +GLLWGASK  PVGYG
Sbjct: 121 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 180

Query: 518 IRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 643
           I KL I CV+EDDKV  D L E+I +FED+VQS+D+ +FNKI
Sbjct: 181 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 222
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,015,725
Number of Sequences: 369166
Number of extensions: 1252580
Number of successful extensions: 3519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3445
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00042

  1. Dr_sW_002_A14
  2. Dr_sW_016_J01
  3. Dr_sW_003_D22
  4. Dr_sW_022_J24
  5. Dr_sW_027_H12