Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H12
(667 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta) 252 5e-67
sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta) 252 7e-67
sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta) 248 1e-65
sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta) 247 2e-65
sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta) 246 4e-65
sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta) 238 8e-63
sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (... 235 9e-62
sp|O96827|EF1B_DROME Probable elongation factor 1-beta (EF-... 229 6e-60
sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta) 228 8e-60
sp|P29522|EF1B2_BOMMO Elongation factor 1-beta' 221 1e-57
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 252 bits (644), Expect = 5e-67
Identities = 135/223 (60%), Positives = 155/223 (69%), Gaps = 17/223 (7%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG+LK G LNDYL DKSYI GY PS AD+ VF S CHALRW+NHIKS+
Sbjct: 3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSSPPPADLCHALRWYNHIKSY 62
Query: 178 SEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQER 309
+ + KKA P A +DLFGSDDEE+ EEA R+++ER
Sbjct: 63 EKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREER 122
Query: 310 LDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGY 489
L Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK PVGY
Sbjct: 123 LAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGY 182
Query: 490 GIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
GI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 183 GIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 252 bits (643), Expect = 7e-67
Identities = 135/223 (60%), Positives = 155/223 (69%), Gaps = 17/223 (7%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG+LK G LNDYL DKSYI GY PS AD+ VF CHALRW+NHIKS+
Sbjct: 3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIKSY 62
Query: 178 SEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQER 309
+ + KKA P A +DLFGSDDEE+ EEA R+++ER
Sbjct: 63 EKEKASLPGIKKALGTYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREER 122
Query: 310 LDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGY 489
L Y +KK+ KPALVAKSSI LDVKPWDDETDMV+LE+CVRSI ADGL+WG+SK PVGY
Sbjct: 123 LAQYESKKAKKPALVAKSSILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGY 182
Query: 490 GIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
GI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 183 GIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 248 bits (633), Expect = 1e-65
Identities = 132/223 (59%), Positives = 154/223 (69%), Gaps = 17/223 (7%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG+LK G LNDYL DKSYI GY PS AD+ VF CHALRW+NHIKS+
Sbjct: 3 FGDLKSPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIKSY 62
Query: 178 SEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQER 309
+ + KKA P A +DLFGSDDEE+ EEA R+++ER
Sbjct: 63 EKEKASLPGVKKALGKYGPANVEDTTESGATDSKDDDDIDLFGSDDEEESEEAKRLREER 122
Query: 310 LDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGY 489
L Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK PVGY
Sbjct: 123 LAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGY 182
Query: 490 GIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
GI+KL I CVVEDDKVGTD LEE+IT F++YVQSMDV +FNKI
Sbjct: 183 GIKKLQIQCVVEDDKVGTDMLEEQITAFDEYVQSMDVAAFNKI 225
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 247 bits (630), Expect = 2e-65
Identities = 131/223 (58%), Positives = 154/223 (69%), Gaps = 17/223 (7%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG+LK G LNDYL DKSYI GY PS AD+ VF CHALRW+NHIKS+
Sbjct: 3 FGDLKTPAGLQVLNDYLADKSYIEGYVPSQADVAVFEAVSGPPPADLCHALRWYNHIKSY 62
Query: 178 SEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQER 309
+ + KK+ P A +DLFGSDDEE+ EEA ++++ER
Sbjct: 63 EKEKASLPGVKKSLGKYGPSSVEDTTGSGAADAKDDDDIDLFGSDDEEESEEAKKLREER 122
Query: 310 LDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGY 489
L Y +KK+ KPA+VAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK PVGY
Sbjct: 123 LAQYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGY 182
Query: 490 GIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
GI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 183 GIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 246 bits (628), Expect = 4e-65
Identities = 134/224 (59%), Positives = 156/224 (69%), Gaps = 18/224 (8%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFH--GCESIKDCYCHALRWFNHIKS 174
FG+LK G LND+L DKSYI GY PS AD+ VF G D + HALRW+NHIKS
Sbjct: 3 FGDLKSAAGLRVLNDFLADKSYIEGYVPSQADIAVFEAVGAPPPADLF-HALRWYNHIKS 61
Query: 175 FSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEED-EEAARIKQE 306
+ + + KKA P A +DLFGSDDEE+ EEA R+++E
Sbjct: 62 YEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKRLREE 121
Query: 307 RLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVG 486
RL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL+WG+SK PVG
Sbjct: 122 RLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVG 181
Query: 487 YGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
YGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 182 YGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta)
Length = 228
Score = 238 bits (608), Expect = 8e-63
Identities = 128/226 (56%), Positives = 152/226 (67%), Gaps = 20/226 (8%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG+LK G LN++L DKSYI GY PS AD+ VF HALRW+NHIKS+
Sbjct: 3 FGDLKSPAGLKVLNEFLADKSYIEGYVPSQADVAVFDALSGAPPADLFHALRWYNHIKSY 62
Query: 178 SEAE------KKAFRHVEPV------------AQXXXXXXXVDLFGSDDEED-EEAARIK 300
+ + KK + PV + +DLFGSDDEE+ EE+ R++
Sbjct: 63 EKQKSSLPGVKKPLGNYGPVNIEDTTGSTAKDTKEEDDDDDIDLFGSDDEEENEESKRVR 122
Query: 301 QERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAP 480
+ERL Y AKKS KPAL+AKSSI LDVKPWDDETDM +LE+CVRSI +GL+WGASK P
Sbjct: 123 EERLAQYEAKKSKKPALIAKSSILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVP 182
Query: 481 VGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
VGYGI+KL I CVVEDDKVGTD LEE IT FED+VQSMDV +FNKI
Sbjct: 183 VGYGIKKLQIQCVVEDDKVGTDVLEENITAFEDFVQSMDVAAFNKI 228
>sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (p30)
Length = 227
Score = 235 bits (599), Expect = 9e-62
Identities = 127/225 (56%), Positives = 151/225 (67%), Gaps = 19/225 (8%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG+LK G L ++L DKSYI GY PS AD+ VF + HALRW+NHIKS+
Sbjct: 3 FGDLKSPAGLKVLKEFLADKSYIEGYVPSQADVAVFDALSAAPPADLFHALRWYNHIKSY 62
Query: 178 SEAE------KKAFRHVEPV-----------AQXXXXXXXVDLFGSDDEED-EEAARIKQ 303
+ + KKA + PV +DLFGSDDEE+ E+A R++
Sbjct: 63 EKQKSSLPGVKKALGNYGPVNIEDTTGSAAKETKEEDDDDIDLFGSDDEEESEDAKRVRD 122
Query: 304 ERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPV 483
ERL Y AKKS KP L+AKSSI LDVKPWDDETDM +LE+C+RSI DGLLWG+SK PV
Sbjct: 123 ERLAQYEAKKSKKPTLIAKSSILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPV 182
Query: 484 GYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
GYGI+KL I CVVEDDKVGTD LEE+IT FED+VQSMDV +FNKI
Sbjct: 183 GYGIKKLQIQCVVEDDKVGTDVLEEKITAFEDFVQSMDVAAFNKI 227
>sp|O96827|EF1B_DROME Probable elongation factor 1-beta (EF-1-beta)
Length = 222
Score = 229 bits (583), Expect = 6e-60
Identities = 123/221 (55%), Positives = 146/221 (66%), Gaps = 15/221 (6%)
Frame = +1
Query: 1 FGNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDC-YCHALRWFNHIKSF 177
FG++ G +LN +L D SYI+GYTPS ADL VF + RW+ HI SF
Sbjct: 3 FGDVTTPQGLKELNAFLADNSYISGYTPSKADLSVFDALGKAPSADNVNVARWYRHIASF 62
Query: 178 SEAEKKAFRHVEPVAQXXXXXXXV--------------DLFGSDDEEDEEAARIKQERLD 315
AE+ A+ P+ Q V DLFGSDDEEDEEA RIKQER+
Sbjct: 63 EAAERAAWSGT-PLPQLAGGKPTVAAAAKPAADDDDDVDLFGSDDEEDEEAERIKQERVA 121
Query: 316 AYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYGI 495
AYAAKKS KPAL+AKSS+ LDVKPWDDETDM E+E VR+I DGLLWGASK PVGYGI
Sbjct: 122 AYAAKKSKKPALIAKSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGI 181
Query: 496 RKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
KL I CV+EDDKV D L+E+I +FED+VQS+D+ +FNKI
Sbjct: 182 NKLQIMCVIEDDKVSIDLLQEKIEEFEDFVQSVDIAAFNKI 222
>sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta)
Length = 207
Score = 228 bits (582), Expect = 8e-60
Identities = 114/205 (55%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Frame = +1
Query: 7 NLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESI-KDCYCHALRWFNHIKSFSE 183
+LK + GQ +LN+ L +KSY+ GY PS D+ F+ D + + LRW+ HI SFS+
Sbjct: 5 DLKAEKGQEQLNELLANKSYLQGYEPSQEDVAAFNQLNKAPSDKFPYLLRWYKHISSFSD 64
Query: 184 AEKKAFRHVEPVAQXXXXXXXVDLFGSDDEEDEEAARIKQERLDAYAAKKSTKPALVAKS 363
AEKK F + P + VDLFGSD EEDEEA +IK ER+ AY+ KKS KPA+VAKS
Sbjct: 65 AEKKGFPGI-PTSASKEEDDDVDLFGSD-EEDEEAEKIKAERMKAYSDKKSKKPAIVAKS 122
Query: 364 SITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGT 543
S+ LD+KPWDDETDM E+EK VRS+ DGL+WGA+K P+ YGI+KL I CVVEDDKV
Sbjct: 123 SVILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSI 182
Query: 544 DFLEEEITKFEDYVQSMDVVSFNKI 618
D L+E+I++FED+VQS+D+ +FNK+
Sbjct: 183 DELQEKISEFEDFVQSVDIAAFNKV 207
>sp|P29522|EF1B2_BOMMO Elongation factor 1-beta'
Length = 222
Score = 221 bits (563), Expect = 1e-57
Identities = 119/219 (54%), Positives = 147/219 (67%), Gaps = 14/219 (6%)
Frame = +1
Query: 4 GNLKIDIGQSKLNDYLFDKSYINGYTPSSADLEVFHGCESIKDCYC-HALRWFNHIKSFS 180
G++K G + LN YL +KSY++GYTPS AD++VF H LRW+N I S++
Sbjct: 4 GDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYT 63
Query: 181 EAEKKAFRH--------VEPVAQXXXXXXX----VDLFGS-DDEEDEEAARIKQERLDAY 321
AE+K + +P A VDLFGS D+EED EA RI++ERL AY
Sbjct: 64 SAERKTWSQGTSPLTAGAKPTAPAPAAKDDDDDDVDLFGSGDEEEDAEAERIREERLKAY 123
Query: 322 AAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYGIRK 501
A KKS KPAL+AKSSI LDVKPWDDETDM E+E VR+I +GLLWGASK PVGYGI K
Sbjct: 124 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINK 183
Query: 502 LVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 618
L I CV+EDDKV D L E+I +FED+VQS+D+ +FNKI
Sbjct: 184 LQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNKI 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,231,771
Number of Sequences: 369166
Number of extensions: 1182957
Number of successful extensions: 3414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3340
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)