Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J01
(476 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta) 198 6e-51
sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta) 196 2e-50
sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta) 195 5e-50
sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta) 195 5e-50
sp|P29692|EF1D_HUMAN Elongation factor 1-delta (EF-1-delta)... 193 2e-49
sp|P29693|EF1D_XENLA Elongation factor 1-delta (EF-1-delta)... 193 2e-49
sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta) 192 3e-49
sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta) 192 3e-49
sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta) 191 7e-49
sp|P57776|EF1D_MOUSE Elongation factor 1-delta (EF-1-delta) 191 7e-49
>sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta)
Length = 280
Score = 198 bits (503), Expect = 6e-51
Identities = 94/124 (75%), Positives = 108/124 (87%)
Frame = +2
Query: 56 VDLFGSDDEEDEEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKC 235
+DLFGSD+EED+EAAR+++ERL YA KK+ KPALVAKSSI LDVKPWDDETDM LE C
Sbjct: 157 IDLFGSDEEEDKEAARLREERLRQYAEKKARKPALVAKSSILLDVKPWDDETDMARLEAC 216
Query: 236 VRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVS 415
VRS+ DGL+WGASK PVGYGIRKL I CVVEDDKVGTD LEEEITKFE++VQS+D+ +
Sbjct: 217 VRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAA 276
Query: 416 FNKI 427
FNKI
Sbjct: 277 FNKI 280
>sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 196 bits (499), Expect = 2e-50
Identities = 96/125 (76%), Positives = 110/125 (88%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSDDEE+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDMV+LE+
Sbjct: 101 IDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMVKLEE 160
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI ADGL+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV
Sbjct: 161 CVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVA 220
Query: 413 SFNKI 427
+FNKI
Sbjct: 221 AFNKI 225
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 195 bits (495), Expect = 5e-50
Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSDDEE+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+
Sbjct: 101 IDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEE 160
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI ADGL+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV
Sbjct: 161 CVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVA 220
Query: 413 SFNKI 427
+FNKI
Sbjct: 221 AFNKI 225
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 195 bits (495), Expect = 5e-50
Identities = 95/125 (76%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSDDEE+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+
Sbjct: 101 IDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEE 160
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI ADGL+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV
Sbjct: 161 CVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVA 220
Query: 413 SFNKI 427
+FNKI
Sbjct: 221 AFNKI 225
>sp|P29692|EF1D_HUMAN Elongation factor 1-delta (EF-1-delta) (Antigen NY-CO-4)
Length = 281
Score = 193 bits (490), Expect = 2e-49
Identities = 94/125 (75%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSD-DEEDEEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSD +EED+EAA++++ERL YA KK+ KPALVAKSSI LDVKPWDDETDM +LE
Sbjct: 157 IDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEA 216
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI DGL+WGASK PVGYGIRKL I CVVEDDKVGTD LEEEITKFE++VQS+D+
Sbjct: 217 CVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIA 276
Query: 413 SFNKI 427
+FNKI
Sbjct: 277 AFNKI 281
>sp|P29693|EF1D_XENLA Elongation factor 1-delta (EF-1-delta) (P36)
Length = 265
Score = 193 bits (490), Expect = 2e-49
Identities = 92/125 (73%), Positives = 108/125 (86%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSD-DEEDEEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSD +EED EAARI++ERL YA KKS KP ++AKSSI LDVKPWDDETDM +LE+
Sbjct: 141 IDLFGSDNEEEDAEAARIREERLKQYAEKKSKKPGVIAKSSILLDVKPWDDETDMAKLEE 200
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVR++ DGL+WG+SK PVGYGI+KL I CVVEDDKVGTD LEEEITKFEDYVQS+D+
Sbjct: 201 CVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEEITKFEDYVQSVDIA 260
Query: 413 SFNKI 427
+FNKI
Sbjct: 261 AFNKI 265
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 192 bits (489), Expect = 3e-49
Identities = 93/125 (74%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSDDEE+ EEA ++++ERL Y +KK+ KPA+VAKSSI LDVKPWDDETDM +LE+
Sbjct: 101 IDLFGSDDEEESEEAKKLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEE 160
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI ADGL+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV
Sbjct: 161 CVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVA 220
Query: 413 SFNKI 427
+FNKI
Sbjct: 221 AFNKI 225
>sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 192 bits (488), Expect = 3e-49
Identities = 93/125 (74%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSDDEE+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+
Sbjct: 101 IDLFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEE 160
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI ADGL+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT F++YVQSMDV
Sbjct: 161 CVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFDEYVQSMDVA 220
Query: 413 SFNKI 427
+FNKI
Sbjct: 221 AFNKI 225
>sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta)
Length = 228
Score = 191 bits (485), Expect = 7e-49
Identities = 93/125 (74%), Positives = 107/125 (85%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSDDEE+ EE+ R+++ERL Y AKKS KPAL+AKSSI LDVKPWDDETDM +LE+
Sbjct: 104 IDLFGSDDEEENEESKRVREERLAQYEAKKSKKPALIAKSSILLDVKPWDDETDMAKLEE 163
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI +GL+WGASK PVGYGI+KL I CVVEDDKVGTD LEE IT FED+VQSMDV
Sbjct: 164 CVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTDVLEENITAFEDFVQSMDVA 223
Query: 413 SFNKI 427
+FNKI
Sbjct: 224 AFNKI 228
>sp|P57776|EF1D_MOUSE Elongation factor 1-delta (EF-1-delta)
Length = 281
Score = 191 bits (485), Expect = 7e-49
Identities = 93/125 (74%), Positives = 108/125 (86%), Gaps = 1/125 (0%)
Frame = +2
Query: 56 VDLFGSDDEE-DEEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEK 232
+DLFGSD+EE D+EAAR+++ERL YA KK+ KP LVAKSSI LDVKPWDDETDM +LE
Sbjct: 157 IDLFGSDEEEEDKEAARLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDETDMAQLET 216
Query: 233 CVRSITADGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVV 412
CVRSI DGL+WGASK PVGYGIRKL I CVVEDDKVGTD LEEEITKFE++VQS+D+
Sbjct: 217 CVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIA 276
Query: 413 SFNKI 427
+F+KI
Sbjct: 277 AFDKI 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,190,391
Number of Sequences: 369166
Number of extensions: 864162
Number of successful extensions: 2515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2477
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)