Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D22
(535 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta) 215 6e-56
sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta) 214 1e-55
sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta) 211 9e-55
sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta) 210 2e-54
sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta) 209 3e-54
sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta) 205 6e-53
sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (... 203 2e-52
sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta) 200 2e-51
sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta) 199 5e-51
sp|O96827|EF1B_DROME Probable elongation factor 1-beta (EF-... 198 8e-51
>sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 215 bits (547), Expect = 6e-56
Identities = 112/176 (63%), Positives = 130/176 (73%), Gaps = 16/176 (9%)
Frame = +1
Query: 7 CHALRWFNHIKSFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDE 141
CHALRW+NHIKS+ + + KKA P A +DLFGSDDE
Sbjct: 50 CHALRWYNHIKSYEKEKASLPGIKKALGTYGPADVEDTTGSGATDSKDDDDIDLFGSDDE 109
Query: 142 ED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADG 318
E+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDMV+LE+CVRSI ADG
Sbjct: 110 EESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMVKLEECVRSIQADG 169
Query: 319 LLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
L+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 170 LVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 214 bits (544), Expect = 1e-55
Identities = 111/176 (63%), Positives = 129/176 (73%), Gaps = 16/176 (9%)
Frame = +1
Query: 7 CHALRWFNHIKSFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDE 141
CHALRW+NHIKS+ + + KKA P A +DLFGSDDE
Sbjct: 50 CHALRWYNHIKSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDE 109
Query: 142 ED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADG 318
E+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADG
Sbjct: 110 EESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADG 169
Query: 319 LLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
L+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 170 LVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q5E983|EF1B_BOVIN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 211 bits (537), Expect = 9e-55
Identities = 109/176 (61%), Positives = 129/176 (73%), Gaps = 16/176 (9%)
Frame = +1
Query: 7 CHALRWFNHIKSFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDE 141
CHALRW+NHIKS+ + + KKA P A +DLFGSDDE
Sbjct: 50 CHALRWYNHIKSYEKEKASLPGVKKALGKYGPANVEDTTESGATDSKDDDDIDLFGSDDE 109
Query: 142 ED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADG 318
E+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADG
Sbjct: 110 EESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADG 169
Query: 319 LLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
L+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT F++YVQSMDV +FNKI
Sbjct: 170 LVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFDEYVQSMDVAAFNKI 225
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 210 bits (535), Expect = 2e-54
Identities = 110/175 (62%), Positives = 128/175 (73%), Gaps = 16/175 (9%)
Frame = +1
Query: 10 HALRWFNHIKSFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDEE 144
HALRW+NHIKS+ + + KKA P A +DLFGSDDEE
Sbjct: 51 HALRWYNHIKSYEKEKASLPGVKKALGKYGPADVEDTTGSGATDSKDDDDIDLFGSDDEE 110
Query: 145 D-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGL 321
+ EEA R+++ERL Y +KK+ KPALVAKSSI LDVKPWDDETDM +LE+CVRSI ADGL
Sbjct: 111 ESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECVRSIQADGL 170
Query: 322 LWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 171 VWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 209 bits (533), Expect = 3e-54
Identities = 108/176 (61%), Positives = 129/176 (73%), Gaps = 16/176 (9%)
Frame = +1
Query: 7 CHALRWFNHIKSFSEAE------KKAFRHVEPV---------AQXXXXXXXVDLFGSDDE 141
CHALRW+NHIKS+ + + KK+ P A +DLFGSDDE
Sbjct: 50 CHALRWYNHIKSYEKEKASLPGVKKSLGKYGPSSVEDTTGSGAADAKDDDDIDLFGSDDE 109
Query: 142 ED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADG 318
E+ EEA ++++ERL Y +KK+ KPA+VAKSSI LDVKPWDDETDM +LE+CVRSI ADG
Sbjct: 110 EESEEAKKLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEECVRSIQADG 169
Query: 319 LLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
L+WG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FEDYVQSMDV +FNKI
Sbjct: 170 LVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQSMDVAAFNKI 225
>sp|Q6DET9|EF1B_XENTR Elongation factor 1-beta (EF-1-beta)
Length = 228
Score = 205 bits (521), Expect = 6e-53
Identities = 107/178 (60%), Positives = 127/178 (71%), Gaps = 19/178 (10%)
Frame = +1
Query: 10 HALRWFNHIKSFSEAE------KKAFRHVEPV------------AQXXXXXXXVDLFGSD 135
HALRW+NHIKS+ + + KK + PV + +DLFGSD
Sbjct: 51 HALRWYNHIKSYEKQKSSLPGVKKPLGNYGPVNIEDTTGSTAKDTKEEDDDDDIDLFGSD 110
Query: 136 DEED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITA 312
DEE+ EE+ R+++ERL Y AKKS KPAL+AKSSI LDVKPWDDETDM +LE+CVRSI
Sbjct: 111 DEEENEESKRVREERLAQYEAKKSKKPALIAKSSILLDVKPWDDETDMAKLEECVRSIQM 170
Query: 313 DGLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
+GL+WGASK PVGYGI+KL I CVVEDDKVGTD LEE IT FED+VQSMDV +FNKI
Sbjct: 171 EGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTDVLEENITAFEDFVQSMDVAAFNKI 228
>sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (p30)
Length = 227
Score = 203 bits (517), Expect = 2e-52
Identities = 107/177 (60%), Positives = 126/177 (71%), Gaps = 18/177 (10%)
Frame = +1
Query: 10 HALRWFNHIKSFSEAE------KKAFRHVEPV-----------AQXXXXXXXVDLFGSDD 138
HALRW+NHIKS+ + + KKA + PV +DLFGSDD
Sbjct: 51 HALRWYNHIKSYEKQKSSLPGVKKALGNYGPVNIEDTTGSAAKETKEEDDDDIDLFGSDD 110
Query: 139 EED-EEAARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITAD 315
EE+ E+A R++ ERL Y AKKS KP L+AKSSI LDVKPWDDETDM +LE+C+RSI D
Sbjct: 111 EEESEDAKRVRDERLAQYEAKKSKKPTLIAKSSILLDVKPWDDETDMGKLEECLRSIQMD 170
Query: 316 GLLWGASKFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
GLLWG+SK PVGYGI+KL I CVVEDDKVGTD LEE+IT FED+VQSMDV +FNKI
Sbjct: 171 GLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDVLEEKITAFEDFVQSMDVAAFNKI 227
>sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta)
Length = 207
Score = 200 bits (508), Expect = 2e-51
Identities = 97/159 (61%), Positives = 123/159 (77%)
Frame = +1
Query: 10 HALRWFNHIKSFSEAEKKAFRHVEPVAQXXXXXXXVDLFGSDDEEDEEAARIKQERLDAY 189
+ LRW+ HI SFS+AEKK F + P + VDLFGSD EEDEEA +IK ER+ AY
Sbjct: 51 YLLRWYKHISSFSDAEKKGFPGI-PTSASKEEDDDVDLFGSD-EEDEEAEKIKAERMKAY 108
Query: 190 AAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYGIRK 369
+ KKS KPA+VAKSS+ LD+KPWDDETDM E+EK VRS+ DGL+WGA+K P+ YGI+K
Sbjct: 109 SDKKSKKPAIVAKSSVILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKK 168
Query: 370 LVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
L I CVVEDDKV D L+E+I++FED+VQS+D+ +FNK+
Sbjct: 169 LSIMCVVEDDKVSIDELQEKISEFEDFVQSVDIAAFNKV 207
>sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta)
Length = 280
Score = 199 bits (505), Expect = 5e-51
Identities = 98/152 (64%), Positives = 115/152 (75%)
Frame = +1
Query: 31 HIKSFSEAEKKAFRHVEPVAQXXXXXXXVDLFGSDDEEDEEAARIKQERLDAYAAKKSTK 210
H+ + E A + P +DLFGSD+EED+EAAR+++ERL YA KK+ K
Sbjct: 131 HVSPMRQVEPPAKKAAAPAEDDEDDD--IDLFGSDEEEDKEAARLREERLRQYAEKKARK 188
Query: 211 PALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGASKFAPVGYGIRKLVITCVV 390
PALVAKSSI LDVKPWDDETDM LE CVRS+ DGL+WGASK PVGYGIRKL I CVV
Sbjct: 189 PALVAKSSILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVV 248
Query: 391 EDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
EDDKVGTD LEEEITKFE++VQS+D+ +FNKI
Sbjct: 249 EDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI 280
>sp|O96827|EF1B_DROME Probable elongation factor 1-beta (EF-1-beta)
Length = 222
Score = 198 bits (503), Expect = 8e-51
Identities = 103/170 (60%), Positives = 120/170 (70%), Gaps = 14/170 (8%)
Frame = +1
Query: 19 RWFNHIKSFSEAEKKAFRHVEPVAQXXXXXXXV--------------DLFGSDDEEDEEA 156
RW+ HI SF AE+ A+ P+ Q V DLFGSDDEEDEEA
Sbjct: 54 RWYRHIASFEAAERAAWSGT-PLPQLAGGKPTVAAAAKPAADDDDDVDLFGSDDEEDEEA 112
Query: 157 ARIKQERLDAYAAKKSTKPALVAKSSITLDVKPWDDETDMVELEKCVRSITADGLLWGAS 336
RIKQER+ AYAAKKS KPAL+AKSS+ LDVKPWDDETDM E+E VR+I DGLLWGAS
Sbjct: 113 ERIKQERVAAYAAKKSKKPALIAKSSVLLDVKPWDDETDMKEMENNVRTIEMDGLLWGAS 172
Query: 337 KFAPVGYGIRKLVITCVVEDDKVGTDFLEEEITKFEDYVQSMDVVSFNKI 486
K PVGYGI KL I CV+EDDKV D L+E+I +FED+VQS+D+ +FNKI
Sbjct: 173 KLVPVGYGINKLQIMCVIEDDKVSIDLLQEKIEEFEDFVQSVDIAAFNKI 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,809,938
Number of Sequences: 369166
Number of extensions: 933618
Number of successful extensions: 2732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2678
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)