Planaria EST Database


DrC_00040

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00040
         (184 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52814|RL39_CAEEL  60S ribosomal protein L39                    86   2e-17
sp|Q962S4|RL39_SPOFR  60S ribosomal protein L39 >gi|54036254...    85   6e-17
sp|P51424|RL39_ARATH  60S ribosomal protein L39                    83   2e-16
sp|O16130|RL39_DROME  60S ribosomal protein L39 (Ribosomal p...    81   6e-16
sp|P51425|RL39_MAIZE  60S ribosomal protein L39 >gi|55977802...    81   8e-16
sp|Q90YS9|RL39_ICTPU  60S ribosomal protein L39                    79   4e-15
sp|P62893|RL39_RAT  60S ribosomal protein L39 >gi|51702813|s...    79   4e-15
sp|Q6BHV8|RL39_DEBHA  60S ribosomal protein L39                    79   4e-15
sp|Q98TF5|RL39_CHICK  60S ribosomal protein L39                    79   4e-15
sp|P48536|RL39_KLUMA  60S ribosomal protein L39 (L46)              79   4e-15
>sp|P52814|RL39_CAEEL 60S ribosomal protein L39
          Length = 51

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 37/42 (88%), Positives = 42/42 (100%)
 Frame = +2

Query: 11  IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLK 136
           IK+KLAKKQ+QNRP+PQWVR+KTGNT+KYNAKRRHWRRTKLK
Sbjct: 9   IKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLK 50
>sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39
 sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39
          Length = 51

 Score = 84.7 bits (208), Expect = 6e-17
 Identities = 36/45 (80%), Positives = 43/45 (95%)
 Frame = +2

Query: 2   SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLK 136
           + +IK+KLAKK +QNRPIPQWVR++TGNTI+YNAKRRHWRRTKLK
Sbjct: 6   TFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 50
>sp|P51424|RL39_ARATH 60S ribosomal protein L39
          Length = 51

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 36/46 (78%), Positives = 40/46 (86%)
 Frame = +2

Query: 2   SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLKF 139
           S +IKKKL KK RQNRPIP W+RL+T NTI+YNAKRRHWRRTKL F
Sbjct: 6   SFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
>sp|O16130|RL39_DROME 60S ribosomal protein L39 (Ribosomal protein 46)
          Length = 51

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 36/45 (80%), Positives = 41/45 (91%)
 Frame = +2

Query: 2   SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLK 136
           S  IK+KLAKK +QNR +PQWVRL+TGNTI+YNAKRRHWRRTKLK
Sbjct: 6   SFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLK 50
>sp|P51425|RL39_MAIZE 60S ribosomal protein L39
 sp|P51426|RL39_ORYSA 60S ribosomal protein L39
          Length = 51

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 35/43 (81%), Positives = 39/43 (90%)
 Frame = +2

Query: 11  IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLKF 139
           IKKKLAKK RQNRPIP W+R++T NTI+YNAKRRHWRRTKL F
Sbjct: 9   IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
>sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39
          Length = 51

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 33/41 (80%), Positives = 39/41 (95%)
 Frame = +2

Query: 11  IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
           IK+ LAKKQ+QNRPIPQW+R+KTGN I+YN+KRRHWRRTKL
Sbjct: 9   IKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
>sp|P62893|RL39_RAT 60S ribosomal protein L39
 sp|P62892|RL39_MOUSE 60S ribosomal protein L39
 sp|P62891|RL39_HUMAN 60S ribosomal protein L39
          Length = 51

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 33/41 (80%), Positives = 39/41 (95%)
 Frame = +2

Query: 11  IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
           IK+ LAKKQ+QNRPIPQW+R+KTGN I+YN+KRRHWRRTKL
Sbjct: 9   IKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
>sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39
          Length = 51

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = +2

Query: 2   SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
           S   K+KLAK Q+QNRP+PQW+RL++GNTI+YNAKRRHWRRTKL
Sbjct: 6   SFRTKQKLAKAQKQNRPLPQWIRLRSGNTIRYNAKRRHWRRTKL 49
>sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39
          Length = 51

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 33/41 (80%), Positives = 39/41 (95%)
 Frame = +2

Query: 11  IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
           IK+ LAKKQ+QNRPIPQW+R+KTGN I+YN+KRRHWRRTKL
Sbjct: 9   IKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
>sp|P48536|RL39_KLUMA 60S ribosomal protein L39 (L46)
          Length = 51

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 34/44 (77%), Positives = 39/44 (88%)
 Frame = +2

Query: 2   SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
           S +IK+KLAK + QNRP+PQW RLKT NTI+YNAKRRHWRRTKL
Sbjct: 6   SFIIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKL 49
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,562,703
Number of Sequences: 369166
Number of extensions: 270635
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00040

  1. Dr_sW_001_P17
  2. Dr_sW_009_D01
  3. Dr_sW_003_J03