Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P17
(179 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52814|RL39_CAEEL 60S ribosomal protein L39 86 2e-17
sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39 >gi|54036254... 85 6e-17
sp|P51424|RL39_ARATH 60S ribosomal protein L39 83 2e-16
sp|O16130|RL39_DROME 60S ribosomal protein L39 (Ribosomal p... 81 6e-16
sp|P51425|RL39_MAIZE 60S ribosomal protein L39 >gi|55977802... 81 8e-16
sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39 79 4e-15
sp|P62893|RL39_RAT 60S ribosomal protein L39 >gi|51702813|s... 79 4e-15
sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39 79 4e-15
sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39 79 4e-15
sp|P48536|RL39_KLUMA 60S ribosomal protein L39 (L46) 79 4e-15
>sp|P52814|RL39_CAEEL 60S ribosomal protein L39
Length = 51
Score = 86.3 bits (212), Expect = 2e-17
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +2
Query: 11 IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLK 136
IK+KLAKKQ+QNRP+PQWVR+KTGNT+KYNAKRRHWRRTKLK
Sbjct: 9 IKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLK 50
>sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39
sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39
Length = 51
Score = 84.7 bits (208), Expect = 6e-17
Identities = 36/45 (80%), Positives = 43/45 (95%)
Frame = +2
Query: 2 SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLK 136
+ +IK+KLAKK +QNRPIPQWVR++TGNTI+YNAKRRHWRRTKLK
Sbjct: 6 TFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 50
>sp|P51424|RL39_ARATH 60S ribosomal protein L39
Length = 51
Score = 82.8 bits (203), Expect = 2e-16
Identities = 36/46 (78%), Positives = 40/46 (86%)
Frame = +2
Query: 2 SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLKF 139
S +IKKKL KK RQNRPIP W+RL+T NTI+YNAKRRHWRRTKL F
Sbjct: 6 SFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
>sp|O16130|RL39_DROME 60S ribosomal protein L39 (Ribosomal protein 46)
Length = 51
Score = 81.3 bits (199), Expect = 6e-16
Identities = 36/45 (80%), Positives = 41/45 (91%)
Frame = +2
Query: 2 SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLK 136
S IK+KLAKK +QNR +PQWVRL+TGNTI+YNAKRRHWRRTKLK
Sbjct: 6 SFRIKQKLAKKLKQNRSVPQWVRLRTGNTIRYNAKRRHWRRTKLK 50
>sp|P51425|RL39_MAIZE 60S ribosomal protein L39
sp|P51426|RL39_ORYSA 60S ribosomal protein L39
Length = 51
Score = 80.9 bits (198), Expect = 8e-16
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +2
Query: 11 IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKLKF 139
IKKKLAKK RQNRPIP W+R++T NTI+YNAKRRHWRRTKL F
Sbjct: 9 IKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
>sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39
Length = 51
Score = 78.6 bits (192), Expect = 4e-15
Identities = 33/41 (80%), Positives = 39/41 (95%)
Frame = +2
Query: 11 IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
IK+ LAKKQ+QNRPIPQW+R+KTGN I+YN+KRRHWRRTKL
Sbjct: 9 IKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
>sp|P62893|RL39_RAT 60S ribosomal protein L39
sp|P62892|RL39_MOUSE 60S ribosomal protein L39
sp|P62891|RL39_HUMAN 60S ribosomal protein L39
Length = 51
Score = 78.6 bits (192), Expect = 4e-15
Identities = 33/41 (80%), Positives = 39/41 (95%)
Frame = +2
Query: 11 IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
IK+ LAKKQ+QNRPIPQW+R+KTGN I+YN+KRRHWRRTKL
Sbjct: 9 IKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
>sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39
Length = 51
Score = 78.6 bits (192), Expect = 4e-15
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +2
Query: 2 SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
S K+KLAK Q+QNRP+PQW+RL++GNTI+YNAKRRHWRRTKL
Sbjct: 6 SFRTKQKLAKAQKQNRPLPQWIRLRSGNTIRYNAKRRHWRRTKL 49
>sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39
Length = 51
Score = 78.6 bits (192), Expect = 4e-15
Identities = 33/41 (80%), Positives = 39/41 (95%)
Frame = +2
Query: 11 IKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
IK+ LAKKQ+QNRPIPQW+R+KTGN I+YN+KRRHWRRTKL
Sbjct: 9 IKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKL 49
>sp|P48536|RL39_KLUMA 60S ribosomal protein L39 (L46)
Length = 51
Score = 78.6 bits (192), Expect = 4e-15
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +2
Query: 2 SLLIKKKLAKKQRQNRPIPQWVRLKTGNTIKYNAKRRHWRRTKL 133
S +IK+KLAK + QNRP+PQW RLKT NTI+YNAKRRHWRRTKL
Sbjct: 6 SFIIKQKLAKAKNQNRPLPQWFRLKTNNTIRYNAKRRHWRRTKL 49
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,965,489
Number of Sequences: 369166
Number of extensions: 257309
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)