DrC_00013
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00013 (543 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P08985|H2AV_DROME Histone H2A variant 176 3e-44 sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z) 174 1e-43 sp|P22647|H2AZ_ONCMY Histone H2A.Z 174 1e-43 sp|P02272|H2AV_CHICK Histone H2A variant 173 2e-43 sp|P08991|H2AV_STRPU Histone H2A variant 173 2e-43 sp|P08992|H2AV_TETTH Histone H2A variant 149 6e-36 sp|P48003|H2AV_SCHPO Histone H2A variant 142 4e-34 sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z) 139 6e-33 sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3) 108 8e-24 sp|Q6GM86|H2AFX_XENLA Histone H2AFX (Histone H2A.X) 107 1e-23
>sp|P08985|H2AV_DROME Histone H2A variant Length = 141 Score = 176 bits (447), Expect = 3e-44 Identities = 92/113 (81%), Positives = 95/113 (84%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGRIHRHLKSRTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI Sbjct: 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQKPM*MKNI 418 +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Q P N+ Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNV 135
>sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z) Length = 128 Score = 174 bits (442), Expect = 1e-43 Identities = 89/100 (89%), Positives = 91/100 (91%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGRIHRHLKSRTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI Sbjct: 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379 +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P22647|H2AZ_ONCMY Histone H2A.Z Length = 128 Score = 174 bits (442), Expect = 1e-43 Identities = 89/100 (89%), Positives = 91/100 (91%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGRIHRHLKSRTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI Sbjct: 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379 +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P02272|H2AV_CHICK Histone H2A variant Length = 128 Score = 173 bits (439), Expect = 2e-43 Identities = 88/100 (88%), Positives = 91/100 (91%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGRIHRHLK+RTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI Sbjct: 23 RAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379 +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P08991|H2AV_STRPU Histone H2A variant Length = 125 Score = 173 bits (439), Expect = 2e-43 Identities = 88/100 (88%), Positives = 91/100 (91%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGRIHRHLK+RTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI Sbjct: 20 RAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 79 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379 +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Sbjct: 80 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 119
>sp|P08992|H2AV_TETTH Histone H2A variant Length = 146 Score = 149 bits (375), Expect = 6e-36 Identities = 75/100 (75%), Positives = 83/100 (83%) Frame = +2 Query: 77 HRAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKR 256 ++AGLQFPVGRIHR LK R ++ RVG ILEYLTAEVLELAGNASKD KV+R Sbjct: 32 YKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRR 91 Query: 257 ISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGK 376 I+PRHL LAIRGDEELD LIKATIAGGGVIPHIHK+L+GK Sbjct: 92 ITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131
>sp|P48003|H2AV_SCHPO Histone H2A variant Length = 171 Score = 142 bits (359), Expect = 4e-34 Identities = 71/97 (73%), Positives = 83/97 (85%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGR+ R LK++T ++ RVG +LEYLTAEVLELAGNA+KDLKVKRI Sbjct: 61 RAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRI 120 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLI 370 +PRHLQLAIRGDEELDTLI+ATIAGGGV+PHI+K L+ Sbjct: 121 TPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z) Length = 134 Score = 139 bits (349), Expect = 6e-33 Identities = 72/106 (67%), Positives = 83/106 (78%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGRI R+LK T RVG +LEYLTAEVLELAGNA+KDLKVKRI Sbjct: 28 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87 Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQK 397 +PRHLQLAIRGD+ELD+LI+ATIA GGV+PHI+K+L+ K G K Sbjct: 88 TPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKKGSK 133
>sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3) Length = 130 Score = 108 bits (270), Expect = 8e-24 Identities = 61/101 (60%), Positives = 72/101 (71%), Gaps = 1/101 (0%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGR+HR L+ S RVG +LEYLTAE+LELAGNA++D K RI Sbjct: 21 RAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79 Query: 260 SPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 379 PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK Sbjct: 80 IPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>sp|Q6GM86|H2AFX_XENLA Histone H2AFX (Histone H2A.X) Length = 139 Score = 107 bits (268), Expect = 1e-23 Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 1/101 (0%) Frame = +2 Query: 80 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259 RAGLQFPVGR+HR L+ +H RVG +LEYLTAE+LELAGNA++D K RI Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 79 Query: 260 SPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 379 PRHLQLA+R DEEL+ L+ TIA GGV+P+I L+ KK Sbjct: 80 IPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,866,174
Number of Sequences: 369166
Number of extensions: 776299
Number of successful extensions: 1842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
