Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D18
(475 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08985|H2AV_DROME Histone H2A variant 127 2e-29
sp|P02272|H2AV_CHICK Histone H2A variant 125 6e-29
sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z) 125 6e-29
sp|P08991|H2AV_STRPU Histone H2A variant 125 6e-29
sp|P22647|H2AZ_ONCMY Histone H2A.Z 125 6e-29
sp|P08992|H2AV_TETTH Histone H2A variant 115 7e-26
sp|P48003|H2AV_SCHPO Histone H2A variant 112 6e-25
sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z) 108 6e-24
sp|O74268|H2A_BOTCI Histone H2A 86 6e-17
sp|P50567|H2A_CHLRE Histone H2A 85 7e-17
>sp|P08985|H2AV_DROME Histone H2A variant
Length = 141
Score = 127 bits (318), Expect = 2e-29
Identities = 66/78 (84%), Positives = 69/78 (88%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKS
Sbjct: 58 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS 117
Query: 347 LIGKKPIIGQKPM*MKNI 400
LIGKK Q P N+
Sbjct: 118 LIGKKEETVQDPQRKGNV 135
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 64 RAGLQFPVGRIHR 102
RAGLQFPVGRIHR
Sbjct: 23 RAGLQFPVGRIHR 35
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 105 LKSRTTSHGRVGA 143
LKSRTTSHGRVGA
Sbjct: 37 LKSRTTSHGRVGA 49
>sp|P02272|H2AV_CHICK Histone H2A variant
Length = 128
Score = 125 bits (313), Expect = 6e-29
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKS
Sbjct: 58 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS 117
Query: 347 LIGKK 361
LIGKK
Sbjct: 118 LIGKK 122
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 64 RAGLQFPVGRIHR 102
RAGLQFPVGRIHR
Sbjct: 23 RAGLQFPVGRIHR 35
Score = 28.5 bits (62), Expect = 8.2
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 105 LKSRTTSHGRVGA 143
LK+RTTSHGRVGA
Sbjct: 37 LKTRTTSHGRVGA 49
>sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z)
Length = 128
Score = 125 bits (313), Expect = 6e-29
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKS
Sbjct: 58 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS 117
Query: 347 LIGKK 361
LIGKK
Sbjct: 118 LIGKK 122
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 64 RAGLQFPVGRIHR 102
RAGLQFPVGRIHR
Sbjct: 23 RAGLQFPVGRIHR 35
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 105 LKSRTTSHGRVGA 143
LKSRTTSHGRVGA
Sbjct: 37 LKSRTTSHGRVGA 49
>sp|P08991|H2AV_STRPU Histone H2A variant
Length = 125
Score = 125 bits (313), Expect = 6e-29
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKS
Sbjct: 55 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS 114
Query: 347 LIGKK 361
LIGKK
Sbjct: 115 LIGKK 119
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 64 RAGLQFPVGRIHR 102
RAGLQFPVGRIHR
Sbjct: 20 RAGLQFPVGRIHR 32
Score = 28.5 bits (62), Expect = 8.2
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 105 LKSRTTSHGRVGA 143
LK+RTTSHGRVGA
Sbjct: 34 LKNRTTSHGRVGA 46
>sp|P22647|H2AZ_ONCMY Histone H2A.Z
Length = 128
Score = 125 bits (313), Expect = 6e-29
Identities = 63/65 (96%), Positives = 65/65 (100%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKS
Sbjct: 58 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS 117
Query: 347 LIGKK 361
LIGKK
Sbjct: 118 LIGKK 122
Score = 31.2 bits (69), Expect = 1.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 64 RAGLQFPVGRIHR 102
RAGLQFPVGRIHR
Sbjct: 23 RAGLQFPVGRIHR 35
Score = 29.6 bits (65), Expect = 3.7
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 105 LKSRTTSHGRVGA 143
LKSRTTSHGRVGA
Sbjct: 37 LKSRTTSHGRVGA 49
>sp|P08992|H2AV_TETTH Histone H2A variant
Length = 146
Score = 115 bits (287), Expect = 7e-26
Identities = 57/64 (89%), Positives = 61/64 (95%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
ILEYLTAEVLELAGNASKD KV+RI+PRHL LAIRGDEELD LIKATIAGGGVIPHIHK+
Sbjct: 68 ILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKA 127
Query: 347 LIGK 358
L+GK
Sbjct: 128 LLGK 131
Score = 31.6 bits (70), Expect = 0.97
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 61 HRAGLQFPVGRIHRL*KAEL 120
++AGLQFPVGRIHR K +
Sbjct: 32 YKAGLQFPVGRIHRFLKGRV 51
>sp|P48003|H2AV_SCHPO Histone H2A variant
Length = 171
Score = 112 bits (279), Expect = 6e-25
Identities = 54/62 (87%), Positives = 61/62 (98%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
+LEYLTAEVLELAGNA+KDLKVKRI+PRHLQLAIRGDEELDTLI+ATIAGGGV+PHI+K
Sbjct: 96 VLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQ 155
Query: 347 LI 352
L+
Sbjct: 156 LL 157
Score = 31.6 bits (70), Expect = 0.97
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 64 RAGLQFPVGRIHRL*KAELQ 123
RAGLQFPVGR+ R KA+ Q
Sbjct: 61 RAGLQFPVGRVRRFLKAKTQ 80
>sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z)
Length = 134
Score = 108 bits (270), Expect = 6e-24
Identities = 54/71 (76%), Positives = 64/71 (90%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKS 346
+LEYLTAEVLELAGNA+KDLKVKRI+PRHLQLAIRGD+ELD+LI+ATIA GGV+PHI+K+
Sbjct: 63 VLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKA 122
Query: 347 LIGKKPIIGQK 379
L+ K G K
Sbjct: 123 LLLKVEKKGSK 133
>sp|O74268|H2A_BOTCI Histone H2A
Length = 137
Score = 85.5 bits (210), Expect = 6e-17
Identities = 44/66 (66%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHK 343
+LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+IH+
Sbjct: 58 VLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQ 117
Query: 344 SLIGKK 361
SL+ KK
Sbjct: 118 SLLPKK 123
Score = 28.9 bits (63), Expect = 6.3
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 64 RAGLQFPVGRIHRL 105
+AGL FPVGR+HRL
Sbjct: 24 KAGLAFPVGRVHRL 37
>sp|P50567|H2A_CHLRE Histone H2A
Length = 129
Score = 85.1 bits (209), Expect = 7e-17
Identities = 44/66 (66%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Frame = +2
Query: 167 ILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHK 343
+LEYLTAEVLELAGNA++D K RI PRH+QLAIR DEEL L+ + TIA GGV+P+IH
Sbjct: 54 VLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHA 113
Query: 344 SLIGKK 361
L+ KK
Sbjct: 114 VLLPKK 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,430,662
Number of Sequences: 369166
Number of extensions: 748973
Number of successful extensions: 1926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1843
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)