Planarian EST Database


Dr_sW_001_F14

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_001_F14
         (497 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08985|H2AV_DROME  Histone H2A variant                         176   2e-44
sp|P17317|H2AZ_HUMAN  Histone H2A.z (H2A/z)                       174   8e-44
sp|P22647|H2AZ_ONCMY  Histone H2A.Z                               174   8e-44
sp|P02272|H2AV_CHICK  Histone H2A variant                         173   2e-43
sp|P08991|H2AV_STRPU  Histone H2A variant                         173   2e-43
sp|P08992|H2AV_TETTH  Histone H2A variant                         149   5e-36
sp|P48003|H2AV_SCHPO  Histone H2A variant                         142   3e-34
sp|Q12692|H2AV_YEAST  Histone H2A variant (Histone H2A.Z)         139   5e-33
sp|P20671|H2AG_HUMAN  Histone H2A.g (H2A/g) (H2A.3)               108   7e-24
sp|Q6GM86|H2AFX_XENLA  Histone H2AFX (Histone H2A.X)              107   1e-23
>sp|P08985|H2AV_DROME Histone H2A variant
          Length = 141

 Score =  176 bits (447), Expect = 2e-44
 Identities = 92/113 (81%), Positives = 95/113 (84%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGRIHRHLKSRTTSHGRVG         ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23  RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQKPM*MKNI 418
           +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK    Q P    N+
Sbjct: 83  TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNV 135
>sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z)
          Length = 128

 Score =  174 bits (442), Expect = 8e-44
 Identities = 89/100 (89%), Positives = 91/100 (91%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGRIHRHLKSRTTSHGRVG         ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23  RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379
           +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 83  TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P22647|H2AZ_ONCMY Histone H2A.Z
          Length = 128

 Score =  174 bits (442), Expect = 8e-44
 Identities = 89/100 (89%), Positives = 91/100 (91%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGRIHRHLKSRTTSHGRVG         ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23  RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379
           +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 83  TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P02272|H2AV_CHICK Histone H2A variant
          Length = 128

 Score =  173 bits (439), Expect = 2e-43
 Identities = 88/100 (88%), Positives = 91/100 (91%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGRIHRHLK+RTTSHGRVG         ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23  RAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379
           +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 83  TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P08991|H2AV_STRPU Histone H2A variant
          Length = 125

 Score =  173 bits (439), Expect = 2e-43
 Identities = 88/100 (88%), Positives = 91/100 (91%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGRIHRHLK+RTTSHGRVG         ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 20  RAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 79

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 379
           +PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 80  TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 119
>sp|P08992|H2AV_TETTH Histone H2A variant
          Length = 146

 Score =  149 bits (375), Expect = 5e-36
 Identities = 75/100 (75%), Positives = 83/100 (83%)
 Frame = +2

Query: 77  HRAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKR 256
           ++AGLQFPVGRIHR LK R ++  RVG         ILEYLTAEVLELAGNASKD KV+R
Sbjct: 32  YKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRR 91

Query: 257 ISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGK 376
           I+PRHL LAIRGDEELD LIKATIAGGGVIPHIHK+L+GK
Sbjct: 92  ITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131
>sp|P48003|H2AV_SCHPO Histone H2A variant
          Length = 171

 Score =  142 bits (359), Expect = 3e-34
 Identities = 71/97 (73%), Positives = 83/97 (85%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGR+ R LK++T ++ RVG         +LEYLTAEVLELAGNA+KDLKVKRI
Sbjct: 61  RAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRI 120

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLI 370
           +PRHLQLAIRGDEELDTLI+ATIAGGGV+PHI+K L+
Sbjct: 121 TPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z)
          Length = 134

 Score =  139 bits (349), Expect = 5e-33
 Identities = 72/106 (67%), Positives = 83/106 (78%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGRI R+LK   T   RVG         +LEYLTAEVLELAGNA+KDLKVKRI
Sbjct: 28  RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87

Query: 260 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQK 397
           +PRHLQLAIRGD+ELD+LI+ATIA GGV+PHI+K+L+ K    G K
Sbjct: 88  TPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKKGSK 133
>sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3)
          Length = 130

 Score =  108 bits (270), Expect = 7e-24
 Identities = 61/101 (60%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGR+HR L+    S  RVG         +LEYLTAE+LELAGNA++D K  RI
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79

Query: 260 SPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 379
            PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 80  IPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>sp|Q6GM86|H2AFX_XENLA Histone H2AFX (Histone H2A.X)
          Length = 139

 Score =  107 bits (268), Expect = 1e-23
 Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
 Frame = +2

Query: 80  RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 259
           RAGLQFPVGR+HR L+    +H RVG         +LEYLTAE+LELAGNA++D K  RI
Sbjct: 21  RAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 79

Query: 260 SPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 379
            PRHLQLA+R DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 80  IPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,628,607
Number of Sequences: 369166
Number of extensions: 638586
Number of successful extensions: 1640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)