Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P04
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08985|H2AV_DROME Histone H2A variant 176 2e-44
sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z) 174 9e-44
sp|P22647|H2AZ_ONCMY Histone H2A.Z 174 9e-44
sp|P02272|H2AV_CHICK Histone H2A variant 173 2e-43
sp|P08991|H2AV_STRPU Histone H2A variant 173 2e-43
sp|P08992|H2AV_TETTH Histone H2A variant 149 5e-36
sp|P48003|H2AV_SCHPO Histone H2A variant 142 4e-34
sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z) 139 5e-33
sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3) 108 8e-24
sp|Q6GM86|H2AFX_XENLA Histone H2AFX (Histone H2A.X) 107 1e-23
>sp|P08985|H2AV_DROME Histone H2A variant
Length = 141
Score = 176 bits (447), Expect = 2e-44
Identities = 92/113 (81%), Positives = 95/113 (84%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGRIHRHLKSRTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQKPM*MKNI 392
+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK Q P N+
Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNV 135
>sp|P17317|H2AZ_HUMAN Histone H2A.z (H2A/z)
Length = 128
Score = 174 bits (442), Expect = 9e-44
Identities = 89/100 (89%), Positives = 91/100 (91%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGRIHRHLKSRTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 353
+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P22647|H2AZ_ONCMY Histone H2A.Z
Length = 128
Score = 174 bits (442), Expect = 9e-44
Identities = 89/100 (89%), Positives = 91/100 (91%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGRIHRHLKSRTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23 RAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 353
+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P02272|H2AV_CHICK Histone H2A variant
Length = 128
Score = 173 bits (439), Expect = 2e-43
Identities = 88/100 (88%), Positives = 91/100 (91%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGRIHRHLK+RTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 23 RAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 353
+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 83 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 122
>sp|P08991|H2AV_STRPU Histone H2A variant
Length = 125
Score = 173 bits (439), Expect = 2e-43
Identities = 88/100 (88%), Positives = 91/100 (91%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGRIHRHLK+RTTSHGRVG ILEYLTAEVLELAGNASKDLKVKRI
Sbjct: 20 RAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 79
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKK 353
+PRHLQLAIRGDEELD+LIKATIAGGGVIPHIHKSLIGKK
Sbjct: 80 TPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 119
>sp|P08992|H2AV_TETTH Histone H2A variant
Length = 146
Score = 149 bits (375), Expect = 5e-36
Identities = 75/100 (75%), Positives = 83/100 (83%)
Frame = +3
Query: 51 HRAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKR 230
++AGLQFPVGRIHR LK R ++ RVG ILEYLTAEVLELAGNASKD KV+R
Sbjct: 32 YKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRR 91
Query: 231 ISPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGK 350
I+PRHL LAIRGDEELD LIKATIAGGGVIPHIHK+L+GK
Sbjct: 92 ITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131
>sp|P48003|H2AV_SCHPO Histone H2A variant
Length = 171
Score = 142 bits (359), Expect = 4e-34
Identities = 71/97 (73%), Positives = 83/97 (85%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGR+ R LK++T ++ RVG +LEYLTAEVLELAGNA+KDLKVKRI
Sbjct: 61 RAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRI 120
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLI 344
+PRHLQLAIRGDEELDTLI+ATIAGGGV+PHI+K L+
Sbjct: 121 TPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>sp|Q12692|H2AV_YEAST Histone H2A variant (Histone H2A.Z)
Length = 134
Score = 139 bits (349), Expect = 5e-33
Identities = 72/106 (67%), Positives = 83/106 (78%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGRI R+LK T RVG +LEYLTAEVLELAGNA+KDLKVKRI
Sbjct: 28 RAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRI 87
Query: 234 SPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHKSLIGKKPIIGQK 371
+PRHLQLAIRGD+ELD+LI+ATIA GGV+PHI+K+L+ K G K
Sbjct: 88 TPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKKGSK 133
>sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3)
Length = 130
Score = 108 bits (270), Expect = 8e-24
Identities = 61/101 (60%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGR+HR L+ S RVG +LEYLTAE+LELAGNA++D K RI
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79
Query: 234 SPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 353
PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 80 IPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>sp|Q6GM86|H2AFX_XENLA Histone H2AFX (Histone H2A.X)
Length = 139
Score = 107 bits (268), Expect = 1e-23
Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = +3
Query: 54 RAGLQFPVGRIHRHLKSRTTSHGRVGXXXXXXXXXILEYLTAEVLELAGNASKDLKVKRI 233
RAGLQFPVGR+HR L+ +H RVG +LEYLTAE+LELAGNA++D K RI
Sbjct: 21 RAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRI 79
Query: 234 SPRHLQLAIRGDEELDTLI-KATIAGGGVIPHIHKSLIGKK 353
PRHLQLA+R DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 80 IPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,216,524
Number of Sequences: 369166
Number of extensions: 737008
Number of successful extensions: 1748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)