Planaria EST Database

DrC_01124

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01124
         (1444 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17133|RU17_DROME  U1 small nuclear ribonucleoprotein 70 ...   192   3e-48
sp|P08621|RU17_HUMAN  U1 small nuclear ribonucleoprotein 70 ...   174   4e-43
sp|P09406|RU17_XENLA  U1 small nuclear ribonucleoprotein 70 ...   164   8e-40
sp|Q42404|RU17_ARATH  U1 small nuclear ribonucleoprotein 70 ...   135   2e-31
sp|Q62376|RU17_MOUSE  U1 small nuclear ribonucleoprotein 70 ...   114   9e-25
sp|Q14103|HNRPD_HUMAN  Heterogeneous nuclear ribonucleoprote...    64   1e-09
sp|P17132|HNRPC_RAT  Heterogeneous nuclear ribonucleoprotein...    64   1e-09
sp|Q9JJ54|HNRPD_RAT  Heterogeneous nuclear ribonucleoprotein...    64   1e-09
sp|Q60668|HNRPD_MOUSE  Heterogeneous nuclear ribonucleoprote...    64   1e-09
sp|Q00916|RU17_YEAST  U1 small nuclear ribonucleoprotein 70 ...    62   4e-09

>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70)
          Length = 448

 Score =  192 bits (487), Expect = 3e-48
 Identities = 89/155 (57%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
 Frame = +3

Query: 6   YLPPNLLALFAARDPIPFAVPLER-PKSHRPLPYTGIAQYVKIFEDPSETPIPPKVETXX 182
           YLPPNLLALFAAR+PIPF  P+++ P   +   Y G+A+++  FEDP +TP+P  VET  
Sbjct: 4   YLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQ 63

Query: 183 XXXXXXXXXXAEQIAYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTESKIRREFE 362
                     AEQ+AYK+E+++ALW+P EI + T+DP++TLF+ARINYDT+ESK+RREFE
Sbjct: 64  ERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFE 123

Query: 363 GYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 467
            YGPIK I +I +  + KP+GY FIEYEHERDMHA
Sbjct: 124 FYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHA 158


 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +2

Query: 692 HAAYKNADGKKIDGHRVLVDVERARTV 772
           HAAYK+ADGKKID  RVLVDVERARTV
Sbjct: 157 HAAYKHADGKKIDSKRVLVDVERARTV 183

>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70) (U1-70K)
          Length = 437

 Score =  174 bits (442), Expect = 4e-43
 Identities = 84/156 (53%), Positives = 106/156 (67%), Gaps = 2/156 (1%)
 Frame = +3

Query: 6   YLPPNLLALFAARDPIPFAVPLER--PKSHRPLPYTGIAQYVKIFEDPSETPIPPKVETX 179
           +LPPNLLALFA RDPIP+  PLE+   + H   PY GIA Y++ FEDP + P P + ET 
Sbjct: 4   FLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETR 63

Query: 180 XXXXXXXXXXXAEQIAYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTESKIRREF 359
                       E+   +VE +L +W+P+  P+   D +KTLFVAR+NYDTTESK+RREF
Sbjct: 64  EERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREF 123

Query: 360 EGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 467
           E YGPIK I M+ +  + KPRGY FIEYEHERDMH+
Sbjct: 124 EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159


 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = +2

Query: 692 HAAYKNADGKKIDGHRVLVDVERARTV 772
           H+AYK+ADGKKIDG RVLVDVER RTV
Sbjct: 158 HSAYKHADGKKIDGRRVLVDVERGRTV 184

>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70) (U1-70K)
          Length = 471

 Score =  164 bits (414), Expect = 8e-40
 Identities = 81/159 (50%), Positives = 104/159 (65%), Gaps = 5/159 (3%)
 Frame = +3

Query: 6   YLPPNLLALFAARDPIPFAVPLER--PKSHRPLPYTGIAQYVKIFEDPSETPIPPKVETX 179
           +LPPNLLALFA RDP+P+  PL++   + H   PY GIA Y++ FEDP + P P + ET 
Sbjct: 4   FLPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETR 63

Query: 180 XXXXXXXXXXXAEQIAYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTESKIRREF 359
                       E+    VE +L +W+P+   +   D +KTLFVAR+NYDTTESK+RREF
Sbjct: 64  EERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREF 123

Query: 360 EGYGPIKTIKMIKN---SMNNKPRGYCFIEYEHERDMHA 467
           E YGPIK I ++ N     + KPRGY FIEYEHERDMH+
Sbjct: 124 EVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162


 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = +2

Query: 692 HAAYKNADGKKIDGHRVLVDVERARTV 772
           H+AYK+ADGKKIDG RVLVDVER RTV
Sbjct: 161 HSAYKHADGKKIDGRRVLVDVERGRTV 187

>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70) (U1-70K)
          Length = 427

 Score =  135 bits (341), Expect = 2e-31
 Identities = 70/156 (44%), Positives = 95/156 (60%), Gaps = 3/156 (1%)
 Frame = +3

Query: 9   LPPNLLALFAARDPIPFAVPLERPKSHRPLPYTGIAQYVKIFEDPSE---TPIPPKVETX 179
           L  NLL LF  R P+ +  P E+ K     PYTG+AQ+V  F +P +    P  P+VE  
Sbjct: 42  LTNNLLKLFEPRPPLEYKPPPEKRKCP---PYTGMAQFVSNFAEPGDPEYAPPKPEVELP 98

Query: 180 XXXXXXXXXXXAEQIAYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTESKIRREF 359
                       E+   K  +DL  ++PN  P+ T DPYKTLFV+R+NY+++ESKI+REF
Sbjct: 99  SQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREF 158

Query: 360 EGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 467
           E YGPIK + ++ + + NKP+GY FIEY H RDM A
Sbjct: 159 ESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKA 194


 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +2

Query: 695 AAYKNADGKKIDGHRVLVDVERARTV 772
           AAYK ADG+KIDG RVLVDVER RTV
Sbjct: 194 AAYKQADGQKIDGRRVLVDVERGRTV 219

>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70 kDa)
           (snRNP70)
          Length = 378

 Score =  114 bits (284), Expect = 9e-25
 Identities = 51/84 (60%), Positives = 65/84 (77%)
 Frame = +3

Query: 216 EQIAYKVEQDLALWNPNEIPSGTKDPYKTLFVARINYDTTESKIRREFEGYGPIKTIKMI 395
           E+   +VE +L +W+P+  P+   D +KTLFVAR+NYDTTESK+RREFE YGPIK I M+
Sbjct: 6   ERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMV 65

Query: 396 KNSMNNKPRGYCFIEYEHERDMHA 467
            +  + KPRGY FIEYEHERDMH+
Sbjct: 66  YSKRSGKPRGYAFIEYEHERDMHS 89


 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = +2

Query: 692 HAAYKNADGKKIDGHRVLVDVERARTV 772
           H+AYK+ADGKKIDG RVLVDVER RTV
Sbjct: 88  HSAYKHADGKKIDGRRVLVDVERGRTV 114

>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 45/70 (64%)
 Frame = +3

Query: 282 TKDPYKTLFVARINYDTTESKIRREFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDM 461
           TK+P K +FV  ++ DT E KIR  F G+G +++I++  ++  NK RG+CFI ++ E  +
Sbjct: 177 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236

Query: 462 HAFITKRVHN 491
              + K+ HN
Sbjct: 237 KKIMEKKYHN 246


 Score = 31.2 bits (69), Expect = 7.9
 Identities = 12/75 (16%), Positives = 39/75 (52%)
 Frame = +3

Query: 264 NEIPSGTKDPYKTLFVARINYDTTESKIRREFEGYGPIKTIKMIKNSMNNKPRGYCFIEY 443
           +E  +  ++ +K +F+  +++DTT+  ++  F  +G +    +  + +  + RG+ F+ +
Sbjct: 87  SEAATAQREEWK-MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF 145

Query: 444 EHERDMHAFITKRVH 488
           +    +   + ++ H
Sbjct: 146 KESESVDKVMDQKEH 160

>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core
           protein C)
          Length = 158

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 45/70 (64%)
 Frame = +3

Query: 282 TKDPYKTLFVARINYDTTESKIRREFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDM 461
           TK+P K +FV  ++ DT E KIR  F G+G +++I++  ++  NK RG+CFI ++ E  +
Sbjct: 29  TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 88

Query: 462 HAFITKRVHN 491
              + K+ HN
Sbjct: 89  KKIMEKKYHN 98

>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 353

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 45/70 (64%)
 Frame = +3

Query: 282 TKDPYKTLFVARINYDTTESKIRREFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDM 461
           TK+P K +FV  ++ DT E KIR  F G+G +++I++  ++  NK RG+CFI ++ E  +
Sbjct: 175 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 234

Query: 462 HAFITKRVHN 491
              + K+ HN
Sbjct: 235 KKIMEKKYHN 244

>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
           element RNA-binding protein 1)
          Length = 355

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 45/70 (64%)
 Frame = +3

Query: 282 TKDPYKTLFVARINYDTTESKIRREFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDM 461
           TK+P K +FV  ++ DT E KIR  F G+G +++I++  ++  NK RG+CFI ++ E  +
Sbjct: 177 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236

Query: 462 HAFITKRVHN 491
              + K+ HN
Sbjct: 237 KKIMEKKYHN 246

>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog
          Length = 300

 Score = 62.0 bits (149), Expect = 4e-09
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
 Frame = +3

Query: 12  PPNLLALFAARDPIPFAVPLERPKSHRPLP--YTGIAQYVKIFEDPSETPIPPKVETXXX 185
           P ++  LF  R P+ +  P + P + R      TG+A  +           P        
Sbjct: 9   PDDVSRLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYMEEFPEGSPNNHL 68

Query: 186 XXXXXXXXXAEQIAYKVEQDLALWNPNEIPS-GTKDPYKTLFVARINYDTTESKIRREFE 362
                      + A  +++ L  WNPN  P     DPY+T+F+ R+ YD  E ++++ F 
Sbjct: 69  QRYEDIKLSKIKNAQLLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFV 128

Query: 363 GYGPIKTIKMIKNSMNNKPRGYCFIEYE 446
            +G I+ I+++K+ +  K +GY FI ++
Sbjct: 129 KFGEIEKIRIVKDKITQKSKGYAFIVFK 156

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,431,251
Number of Sequences: 369166
Number of extensions: 2753769
Number of successful extensions: 7125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7104
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 17310039540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01124

  1. Dr_sW_028_G07
  2. Dr_sW_021_E07
  3. Dr_sW_024_P17