Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P17
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92G50|FTSK_RICCN DNA translocase ftsK 30 2.1
sp|O34105|SOPB_SALDU Inositol phosphate phosphatase sopB (E... 30 2.7
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 30 3.5
sp|P33737|MS2A_DROSI Accessory gland-specific peptide 26Aa ... 29 4.6
sp|P33736|MS2A_DROSE Accessory gland-specific peptide 26Aa ... 29 4.6
sp|P14195|AAC1_DICDI AAC-rich mRNA clone AAC1 protein 29 4.6
sp|Q7VRX2|RL25_BLOFL 50S ribosomal protein L25 29 6.1
sp|Q8BHE1|F51A1_MOUSE Protein FAM51A1 28 7.9
sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CN... 28 7.9
>sp|Q92G50|FTSK_RICCN DNA translocase ftsK
Length = 744
Score = 30.4 bits (67), Expect = 2.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 231 YGEYGADME*LCCLYKY-NIA*IVLLSLCFEWWFECWHFRLIGDF 362
+G Y +D CLY++ +A ++ CF W CW+ R G F
Sbjct: 55 FGSYLSD-----CLYQFFGLAAFIIPLACFVWGRNCWYGRYRGSF 94
>sp|O34105|SOPB_SALDU Inositol phosphate phosphatase sopB (Effector protein sopB)
Length = 561
Score = 30.0 bits (66), Expect = 2.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 184 GKRREKMESFRPQFVSMENTGQTWNNYVVCISIISHKLFCYHFVLNGGLSVGTFV 348
GK K RP+ + + G TW NY+ +H L + + L+VG V
Sbjct: 36 GKAPAKAPDARPEIIVLREPGATWGNYLQHQKTSNHSLHNLYNLRRDLLTVGATV 90
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 29.6 bits (65), Expect = 3.5
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 402 NSSTRPNEYYTNSKNHQSNESANTQTTIQNKVITEQFMRYYTYTNN 265
N+ N Y NS N+ +N NTQ N+ + + M NN
Sbjct: 153 NNMNNYNFYNNNSSNNNNNNQTNTQNNFMNRNMKNKNMNNNNNNNN 198
>sp|P33737|MS2A_DROSI Accessory gland-specific peptide 26Aa precursor (Male accessory
gland secretory protein 355A)
Length = 255
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = -3
Query: 429 PRKNSK*NINSSTRPNEYYTNSKNHQSNESANTQTTIQNKVITEQFMRYYTYTNNIIIPC 250
P NSK NSST P++ T+ N SN+ A ++++++ EQ + +++ +
Sbjct: 86 PINNSKSRKNSSTLPSQILTDKPNQGSNQIA--LKALKHRLLMEQNNNLFLRNHSVSLMN 143
Query: 249 LPRILHTDELRPKRLH 202
TD ++ ++L+
Sbjct: 144 EIEARKTDIIQARQLN 159
>sp|P33736|MS2A_DROSE Accessory gland-specific peptide 26Aa precursor (Male accessory
gland secretory protein 355A)
Length = 255
Score = 29.3 bits (64), Expect = 4.6
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = -3
Query: 429 PRKNSK*NINSSTRPNEYYTNSKNHQSNESANTQTTIQNKVITEQFMRYYTYTNNIIIPC 250
P NSK NSST P++ T+ N SN+ A ++++++ EQ + +++ +
Sbjct: 86 PINNSKSRKNSSTLPSQILTDKPNQGSNQIA--LKALKHRLLMEQNNNLFLRNHSVSLMN 143
Query: 249 LPRILHTDELRPKRLH 202
TD ++ ++L+
Sbjct: 144 EIEARKTDIIQARQLN 159
>sp|P14195|AAC1_DICDI AAC-rich mRNA clone AAC1 protein
Length = 183
Score = 29.3 bits (64), Expect = 4.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Frame = -3
Query: 402 NSSTRPNEYYTNSKNHQSNESA-------NTQTTIQNKVITEQFMRYYTY 274
NSSTRPN+ K+++S S T TT T +YY Y
Sbjct: 5 NSSTRPNKQQKLLKSNESTTSTTTTTTPITTTTTTTTTTTTPNLSKYYNY 54
>sp|Q7VRX2|RL25_BLOFL 50S ribosomal protein L25
Length = 103
Score = 28.9 bits (63), Expect = 6.1
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = -3
Query: 456 SVIFNE*RRPRKNSK*NINSSTRPNEYYTNSKNHQSNESANTQTTIQNKVITEQFMRYYT 277
+VI+N+ + P N + + + P + KN++ N + TI K+ Q ++Y+
Sbjct: 28 AVIYNKNKSPNINVQLSNKDLSHPENVHYFLKNNKVQILINNEFTITAKI---QDVQYHP 84
Query: 276 YTNNII 259
Y +NII
Sbjct: 85 YKSNII 90
>sp|Q8BHE1|F51A1_MOUSE Protein FAM51A1
Length = 238
Score = 28.5 bits (62), Expect = 7.9
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 432 RPRKNSK*NINSSTRPNEYYTNSKNHQSNESANTQTTIQNKVITEQFMRYYTYT 271
+P +NS +STR NE + +S+ + + N ITE+ +Y+ T
Sbjct: 94 QPLRNSS-RTQASTRGNEARCEEEELESDSDDEVECDLSNMEITEELRQYFAQT 146
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 684
Score = 28.5 bits (62), Expect = 7.9
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 67 KEKGVDQRNIVNTGVDRGVNQKTDLPIDLKIRSV-RRIKTGKRREKMESFRPQFVSMENT 243
KEK ++ + D+ N+K K + ++ K K +EK E + + V ++ +
Sbjct: 94 KEKKKKKKEKKSKADDKNENKKDPEKKKKKEKEKEKKKKEEKTKEKKEEEKKEVVVIDPS 153
Query: 244 GQTWNNYVVCISI 282
G T+ N++ CI++
Sbjct: 154 GNTYYNWLFCITL 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,925,827
Number of Sequences: 369166
Number of extensions: 809406
Number of successful extensions: 2348
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)