Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_E07
(916 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 ... 63 1e-09
sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 ... 63 1e-09
sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 ... 62 3e-09
sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 ... 57 6e-08
sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 ... 57 7e-08
sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprote... 41 0.004
sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein... 41 0.004
sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein... 41 0.004
sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprote... 41 0.004
sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotei... 39 0.020
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 437
Score = 62.8 bits (151), Expect = 1e-09
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +2
Query: 2 REFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 118
REFE YGPIK I M+ + + KPRGY FIEYEHERDMH+
Sbjct: 121 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159
Score = 50.4 bits (119), Expect = 7e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 327 HAAYKNADGKKIDGHRVLVDVERARTV 407
H+AYK+ADGKKIDG RVLVDVER RTV
Sbjct: 158 HSAYKHADGKKIDGRRVLVDVERGRTV 184
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70 kDa)
(snRNP70)
Length = 378
Score = 62.8 bits (151), Expect = 1e-09
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +2
Query: 2 REFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 118
REFE YGPIK I M+ + + KPRGY FIEYEHERDMH+
Sbjct: 51 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 89
Score = 50.4 bits (119), Expect = 7e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 327 HAAYKNADGKKIDGHRVLVDVERARTV 407
H+AYK+ADGKKIDG RVLVDVER RTV
Sbjct: 88 HSAYKHADGKKIDGRRVLVDVERGRTV 114
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70)
Length = 448
Score = 61.6 bits (148), Expect = 3e-09
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +2
Query: 2 REFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 118
REFE YGPIK I +I + + KP+GY FIEYEHERDMHA
Sbjct: 120 REFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHA 158
Score = 50.4 bits (119), Expect = 7e-06
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3
Query: 327 HAAYKNADGKKIDGHRVLVDVERARTV 407
HAAYK+ADGKKID RVLVDVERARTV
Sbjct: 157 HAAYKHADGKKIDSKRVLVDVERARTV 183
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 427
Score = 57.4 bits (137), Expect = 6e-08
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +2
Query: 2 REFEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHA 118
REFE YGPIK + ++ + + NKP+GY FIEY H RDM A
Sbjct: 156 REFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKA 194
Score = 46.6 bits (109), Expect = 1e-04
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3
Query: 330 AAYKNADGKKIDGHRVLVDVERARTV 407
AAYK ADG+KIDG RVLVDVER RTV
Sbjct: 194 AAYKQADGQKIDGRRVLVDVERGRTV 219
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
(snRNP70) (U1-70K)
Length = 471
Score = 57.0 bits (136), Expect = 7e-08
Identities = 27/42 (64%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Frame = +2
Query: 2 REFEGYGPIKTIKMIKNSMNN---KPRGYCFIEYEHERDMHA 118
REFE YGPIK I ++ N + KPRGY FIEYEHERDMH+
Sbjct: 121 REFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162
Score = 50.4 bits (119), Expect = 7e-06
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +3
Query: 327 HAAYKNADGKKIDGHRVLVDVERARTV 407
H+AYK+ADGKKIDG RVLVDVER RTV
Sbjct: 161 HSAYKHADGKKIDGRRVLVDVERGRTV 187
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 41.2 bits (95), Expect = 0.004
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +2
Query: 8 FEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHAFITKRVHN 142
F G+G +++I++ ++ NK RG+CFI ++ E + + K+ HN
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 246
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP core
protein C)
Length = 158
Score = 41.2 bits (95), Expect = 0.004
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +2
Query: 8 FEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHAFITKRVHN 142
F G+G +++I++ ++ NK RG+CFI ++ E + + K+ HN
Sbjct: 54 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 98
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 353
Score = 41.2 bits (95), Expect = 0.004
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +2
Query: 8 FEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHAFITKRVHN 142
F G+G +++I++ ++ NK RG+CFI ++ E + + K+ HN
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 244
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) (AU-rich
element RNA-binding protein 1)
Length = 355
Score = 41.2 bits (95), Expect = 0.004
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +2
Query: 8 FEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHAFITKRVHN 142
F G+G +++I++ ++ NK RG+CFI ++ E + + K+ HN
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 246
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 (hnRNP A3(B))
Length = 385
Score = 38.9 bits (89), Expect = 0.020
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 8 FEGYGPIKTIKMIKNSMNNKPRGYCFIEYEHERDMHAFITKRVHNYLKH 154
FEGYG I+TI+++++ + K RG+ F+ ++ + + ++ H H
Sbjct: 138 FEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLH 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,644,389
Number of Sequences: 369166
Number of extensions: 1598999
Number of successful extensions: 3736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3733
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)