DrC_01119
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01119 (773 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 (Carboxyl... 147 4e-35 sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 (Nuclear ... 147 4e-35 sp|P70060|LDB1_XENLA LIM domain-binding protein 1 (XLDB1) 146 5e-35 sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 (Carboxyl... 143 6e-34 sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 (Carboxyl... 137 2e-32 sp|P27454|VNCS_AEDEV Noncapsid protein NS-1 (Nonstructural ... 33 0.66 sp|Q5RAS1|RRM3_PONPY Putative rRNA methyltransferase 3 (rRN... 33 0.86 sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 33 0.86 sp|Q8IY81|RRM3_HUMAN Putative rRNA methyltransferase 3 (rRN... 32 2.5 sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 32 2.5
>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 (Carboxyl-terminal LIM domain-binding protein 2) (CLIM-2) (LIM-domain binding factor CLIM2) Length = 375 Score = 147 bits (370), Expect = 4e-35 Identities = 75/134 (55%), Positives = 94/134 (70%), Gaps = 4/134 (2%) Frame = +3 Query: 198 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 377 ++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILEPMQE Sbjct: 159 KTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 218 Query: 378 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRK---GSTANSD 548 LMSR K YSLSP+DCLKT LFQKWQRMVAPP + + +Q +KRRKRK GST +S Sbjct: 219 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PTRQQPSKRRKRKMSGGSTMSSG 274 Query: 549 SA-SNRSSKRKQSP 587 +N S+ +K+SP Sbjct: 275 GGNTNNSNSKKKSP 288
Score = 40.8 bits (94), Expect = 0.004
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRFVLDFNYDE 183
F+ G +E YY L+ +E++H++ + +D + MV T VEGR L+F +D+
Sbjct: 96 FEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMV-TQHGKPMFTQVCVEGRLYLEFMFDD 154
Query: 184 LDAYQKVGHFKL 219
+ K HF +
Sbjct: 155 MMRI-KTWHFSI 165
>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 (Nuclear LIM interactor) Length = 375 Score = 147 bits (370), Expect = 4e-35 Identities = 75/134 (55%), Positives = 94/134 (70%), Gaps = 4/134 (2%) Frame = +3 Query: 198 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 377 ++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILEPMQE Sbjct: 159 KTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 218 Query: 378 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRK---GSTANSD 548 LMSR K YSLSP+DCLKT LFQKWQRMVAPP + + +Q +KRRKRK GST +S Sbjct: 219 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PARQQPSKRRKRKMSGGSTMSSG 274 Query: 549 SA-SNRSSKRKQSP 587 +N S+ +K+SP Sbjct: 275 GGNTNNSNSKKKSP 288
Score = 40.8 bits (94), Expect = 0.004
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRFVLDFNYDE 183
F+ G +E YY L+ +E++H++ + +D + MV T VEGR L+F +D+
Sbjct: 96 FEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMV-TQHGKPMFTQVCVEGRLYLEFMFDD 154
Query: 184 LDAYQKVGHFKL 219
+ K HF +
Sbjct: 155 MMRI-KTWHFSI 165
>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 (XLDB1) Length = 375 Score = 146 bits (369), Expect = 5e-35 Identities = 75/134 (55%), Positives = 93/134 (69%), Gaps = 4/134 (2%) Frame = +3 Query: 198 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 377 ++W F IR HRE I RS+ QML + SKN+TRCG+ N T+N+ R+C ILEPMQE Sbjct: 159 KTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE 218 Query: 378 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRK---GSTANSD 548 LMSR K YSLSP+DCLKT LFQKWQRMVAPP + + + NKRRKRK GST +S Sbjct: 219 LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAE----PARQAPNKRRKRKMSGGSTMSSG 274 Query: 549 SA-SNRSSKRKQSP 587 +N S+ +K+SP Sbjct: 275 GGNTNNSNSKKKSP 288
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRFVLDFNYDE 183
F+ G +E YY L+ +ES+H + + +D + MV T VEGR L+F +D+
Sbjct: 96 FEGGATELYYVLKHPKESFHNNFVSLDCDQCTMV-TQHGKPMFTQVCVEGRLYLEFMFDD 154
Query: 184 LDAYQKVGHFKL 219
+ K HF +
Sbjct: 155 MMRI-KTWHFSI 165
>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 (Carboxyl-terminal LIM domain-binding protein 1) (CLIM-1) (LIM-domain binding factor CLIM1) Length = 373 Score = 143 bits (360), Expect = 6e-34 Identities = 70/139 (50%), Positives = 96/139 (69%), Gaps = 5/139 (3%) Frame = +3 Query: 198 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 377 ++W F IR +RE + RS+ Q+L + SKN+TR G+ N+T+N+ R+C ILEPMQE Sbjct: 156 KTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQE 215 Query: 378 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSAS 557 LMSR K Y+LSP+DCLKT LFQKWQRMVAPP + + + T KRRKRK ST+++ ++S Sbjct: 216 LMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE----PTRQPTTKRRKRKNSTSSTSNSS 271 Query: 558 -----NRSSKRKQSPVPSL 599 N S +K++P SL Sbjct: 272 GGNTTNSSGSKKKTPAASL 290
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRFVLDFNYDE 183
F+ G ++ YY L+ +ESYH S+I VD + MV T EGR +L+F +D+
Sbjct: 93 FEGGVTDLYYILKHSKESYHNSSITVDCDQCAMV-TQHGKPMFTKVCTEGRLILEFTFDD 151
Query: 184 LDAYQKVGHFKL 219
L K HF +
Sbjct: 152 LMRI-KTWHFTI 162
>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 (Carboxyl-terminal LIM domain-binding protein 1) (CLIM-1) (LIM-domain binding factor CLIM1) Length = 373 Score = 137 bits (346), Expect = 2e-32 Identities = 67/139 (48%), Positives = 95/139 (68%), Gaps = 5/139 (3%) Frame = +3 Query: 198 ESWTFQIRSHREFILRSMPGFGCNQEQMLMEFSKNVTRCGIPNYTMNFFRICTILEPMQE 377 ++W F IR +RE + RS+ Q+L + SKN+TR G+ N+T+N+ R+C ILEPMQE Sbjct: 156 KTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQE 215 Query: 378 LMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSAS 557 LMSR K Y+LSP+DCLKT LFQKWQRMVAPP + + + T KRRKRK ST+++ ++S Sbjct: 216 LMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAE----PTRQPTTKRRKRKNSTSSTSNSS 271 Query: 558 -----NRSSKRKQSPVPSL 599 N + +K++ +L Sbjct: 272 AGNNANSTGSKKKTTAANL 290
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +1
Query: 4 FDSGCSEYYYFLRSVRESYHTSTIVVDSESAQMVMTFPRXXXXXXXXVEGRFVLDFNYDE 183
F+ G ++ YY L+ +ESYH S+I VD + MV T EGR +L+F +D+
Sbjct: 93 FEGGVTDLYYILKHSKESYHNSSITVDCDQCTMV-TQHGKPMFTKVCTEGRLILEFTFDD 151
Query: 184 LDAYQKVGHFKL 219
L K HF +
Sbjct: 152 LMRI-KTWHFTI 162
>sp|P27454|VNCS_AEDEV Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1) Length = 849 Score = 33.5 bits (75), Expect = 0.66 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +3 Query: 480 PKSESNRQTNKRRKRKGSTANSDSASNRSSKRKQS 584 PK ++ QTNKR+K +T +S S N+SS +Q+ Sbjct: 272 PKQGTSNQTNKRKKSTDTTESSGSKKNKSSNYQQN 306
>sp|Q5RAS1|RRM3_PONPY Putative rRNA methyltransferase 3 (rRNA (uridine-2'-O-)-methyltransferase 3) Length = 841 Score = 33.1 bits (74), Expect = 0.86 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = +3 Query: 387 RQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNRS 566 RQ+ + CLKT + + AP G + S + T + + K ++SDS+S+ Sbjct: 560 RQQQLPQTLPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLKGEEKDGISDSDSSSSSE 619 Query: 567 SKRKQSPV 590 + PV Sbjct: 620 EEESWEPV 627
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch Length = 5412 Score = 33.1 bits (74), Expect = 0.86 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 441 QKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNRSSKRKQSPVPSLP 602 Q+ Q+ V P + K+E + +K R S S +K K+SPVPS P Sbjct: 1410 QEAQKPVPAPEEAIKTEKSPLASKETSRPESATGSVKEDTEQTKSKKSPVPSRP 1463
Score = 29.6 bits (65), Expect = 9.5
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +3
Query: 375 ELMSRQKAYSLSPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSA 554
E SR + + S KD + + + + VA P E++R + K S
Sbjct: 1947 EEASRPASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPASVAESIKDEAEKSKEE 2006
Query: 555 SNRSSKRKQSPVPS 596
S R S ++SP+PS
Sbjct: 2007 SRRESVAEKSPLPS 2020
>sp|Q8IY81|RRM3_HUMAN Putative rRNA methyltransferase 3 (rRNA (uridine-2'-O-)-methyltransferase 3) Length = 847 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = +3 Query: 408 SPKDCLKTTLFQKWQRMVAPPGQQPKSESNRQTNKRRKRKGSTANSDSASNRSSKRKQSP 587 +P CLKT + + AP G + S + T + K ++SDS+++ + P Sbjct: 573 TPPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESWEP 632 Query: 588 V 590 + Sbjct: 633 L 633
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 Length = 497 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +3 Query: 483 KSESNRQTNKRRKRKGSTANSDSASNRSSKRKQSPVPSLPN 605 +S+S Q+ KRRK + + +SDS S S+ + P PN Sbjct: 374 RSQSRSQSPKRRKSQSYSPSSDSKSRSPSRSRSDSPPHKPN 414
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,556,906
Number of Sequences: 369166
Number of extensions: 1724102
Number of successful extensions: 5184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5143
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
